Wall clock time and date at job start Mon Mar 30 2020 01:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99482 * 2 1 4 4 H 1.48493 * 109.47419 * 275.70751 * 3 2 1 5 5 H 1.48502 * 109.47078 * 35.70732 * 3 2 1 6 6 H 1.48501 * 109.46908 * 155.70429 * 3 2 1 7 7 C 1.38948 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00107 * 337.63814 * 7 2 1 9 9 N 1.37095 * 119.99972 * 157.64762 * 7 2 1 10 10 C 1.46500 * 119.99944 * 322.24004 * 9 7 2 11 11 C 1.53001 * 109.47493 * 263.62793 * 10 9 7 12 12 C 1.50697 * 109.47088 * 179.97438 * 11 10 9 13 13 O 1.20831 * 120.00485 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00045 * 179.97438 * 12 11 10 15 15 C 1.34770 * 120.00364 * 142.24716 * 9 7 2 16 16 O 1.21297 * 120.00581 * 179.97438 * 15 9 7 17 17 C 1.50699 * 120.00018 * 0.27132 * 15 9 7 18 18 C 1.53001 * 109.47702 * 179.72402 * 17 15 9 19 19 H 1.09003 * 112.91332 * 43.51164 * 18 17 15 20 20 C 1.53725 * 113.71277 * 174.99699 * 18 17 15 21 21 C 1.51517 * 86.60615 * 114.39970 * 20 18 17 22 22 O 1.21279 * 134.17442 * 180.02562 * 21 20 18 23 23 N 1.35837 * 91.64909 * 0.02562 * 21 20 18 24 24 H 0.96992 * 120.00820 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47069 * 23.62746 * 10 9 7 26 26 H 1.09001 * 109.47434 * 143.62778 * 10 9 7 27 27 H 1.08995 * 109.47280 * 300.00117 * 11 10 9 28 28 H 1.09001 * 109.46938 * 60.00126 * 11 10 9 29 29 H 0.96701 * 117.00258 * 180.02562 * 14 12 11 30 30 H 1.08998 * 109.47219 * 299.72626 * 17 15 9 31 31 H 1.09006 * 109.47250 * 59.72573 * 17 15 9 32 32 H 1.08992 * 113.69559 * 228.83119 * 20 18 17 33 33 H 1.09002 * 113.68864 * 359.88072 * 20 18 17 34 34 H 0.97001 * 132.37794 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.3749 2.1162 -1.3930 5 1 1.5108 2.6149 0.8172 6 1 3.6006 1.4086 0.5761 7 6 2.0089 -1.2033 -0.0005 8 1 1.5300 -2.1035 0.3549 9 7 3.3026 -1.2476 -0.4521 10 6 3.7053 -0.4344 -1.6022 11 6 3.6499 -1.2850 -2.8728 12 6 4.0635 -0.4483 -4.0559 13 8 4.3714 0.7095 -3.8990 14 8 4.0907 -0.9895 -5.2840 15 6 4.2040 -2.0393 0.1619 16 8 5.3485 -2.0788 -0.2378 17 6 3.7884 -2.8805 1.3412 18 6 4.9897 -3.6841 1.8432 19 1 5.9052 -3.0942 1.8903 20 6 4.7053 -4.4868 3.1230 21 6 4.9085 -5.7298 2.2808 22 8 4.8672 -6.9205 2.5077 23 7 5.1552 -4.9856 1.1716 24 1 -0.4851 0.8399 0.0004 25 1 3.0276 0.4135 -1.7028 26 1 4.7220 -0.0711 -1.4523 27 1 4.3275 -2.1328 -2.7723 28 1 2.6332 -1.6483 -3.0228 29 1 4.3629 -0.4136 -6.0116 30 1 3.4251 -2.2332 2.1393 31 1 2.9951 -3.5641 1.0383 32 1 5.4592 -4.3555 3.8991 33 1 3.6877 -4.3702 3.4960 34 1 5.3661 -5.2267 0.2560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:02 Heat of formation + Delta-G solvation = -156.973875 kcal Electronic energy + Delta-G solvation = -20844.081496 eV Core-core repulsion = 17356.167340 eV Total energy + Delta-G solvation = -3487.914156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69494 -41.35562 -40.34618 -37.77064 -37.25969 -36.80439 -34.21488 -32.89649 -31.11429 -29.02756 -26.92873 -26.20156 -23.46729 -22.19299 -20.90781 -20.41826 -19.36901 -18.71974 -18.35186 -17.92781 -17.77589 -17.35386 -17.00726 -16.80119 -16.33439 -15.94587 -15.53210 -14.80393 -14.64387 -14.40586 -14.07640 -13.94456 -13.60348 -13.50003 -13.01050 -12.79784 -12.75563 -12.62484 -12.44423 -12.30446 -12.04171 -11.82118 -11.71640 -11.17132 -11.03796 -10.48906 -10.14617 -9.81281 -8.53314 -6.14259 1.10968 1.21754 1.35242 1.42151 1.52388 1.81137 1.99792 2.18144 2.41634 2.72078 2.95123 3.17778 3.72372 3.80604 3.88426 3.99282 4.26220 4.31819 4.50474 4.57719 4.67621 4.74594 4.84996 4.88732 4.95618 5.23400 5.39028 5.48870 5.51972 5.96564 6.09234 6.22782 6.92757 6.95189 7.38455 7.40043 7.75875 8.59726 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.006237 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.740381 B = 4488.293140 C = 5627.277766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.043 3.957 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.340 4.340 8 H 0.101 0.899 9 N -0.473 5.473 10 C 0.112 3.888 11 C -0.117 4.117 12 C 0.495 3.505 13 O -0.553 6.553 14 O -0.506 6.506 15 C 0.480 3.520 16 O -0.610 6.610 17 C -0.121 4.121 18 C 0.153 3.847 19 H 0.110 0.890 20 C -0.154 4.154 21 C 0.518 3.482 22 O -0.566 6.566 23 N -0.736 5.736 24 H 0.279 0.721 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.428 0.572 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.128 -2.263 -0.568 6.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.119 0.881 9 N -0.194 5.194 10 C -0.012 4.012 11 C -0.156 4.156 12 C 0.338 3.662 13 O -0.444 6.444 14 O -0.319 6.319 15 C 0.271 3.729 16 O -0.496 6.496 17 C -0.161 4.161 18 C 0.049 3.951 19 H 0.127 0.873 20 C -0.194 4.194 21 C 0.305 3.695 22 O -0.444 6.444 23 N -0.394 5.394 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.290 0.710 30 H 0.143 0.857 31 H 0.115 0.885 32 H 0.161 0.839 33 H 0.153 0.847 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.433 -2.737 -0.301 6.997 hybrid contribution 0.223 1.396 -1.364 1.965 sum 6.655 -1.341 -1.665 6.990 Atomic orbital electron populations 1.69800 1.07187 1.29076 1.46162 1.25676 0.95240 1.00228 0.95099 0.86462 0.80211 0.81943 0.78056 1.20552 1.20915 1.18713 1.19004 0.86570 0.96231 1.44873 0.88145 1.43827 1.09821 1.40592 1.25152 1.21334 1.00306 0.93652 0.85901 1.21585 1.05610 0.99358 0.89038 1.23380 0.72231 0.85888 0.84675 1.90703 1.46992 1.20233 1.86469 1.84504 1.80799 1.48770 1.17854 1.21066 0.83995 0.82612 0.85216 1.90565 1.20097 1.70290 1.68602 1.21697 0.98411 0.98717 0.97270 1.22265 0.98546 0.85339 0.88962 0.87261 1.24040 1.07816 0.89381 0.98130 1.22748 0.73362 0.88369 0.84976 1.90704 1.55154 1.17672 1.80898 1.49029 1.70565 1.08117 1.11684 0.91052 0.91945 0.91630 0.86602 0.86431 0.70983 0.85694 0.88540 0.83948 0.84677 0.76128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.35 13.96 21.66 0.30 -45.04 16 2 C 0.04 2.09 5.26 84.93 0.45 2.54 16 3 Si 0.91 39.99 25.05 68.60 1.72 41.71 16 4 H -0.28 -12.63 6.69 99.48 0.67 -11.97 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.34 -15.39 9.06 84.04 0.76 -14.62 16 8 H 0.10 4.67 7.23 -2.92 -0.02 4.65 16 9 N -0.47 -19.63 2.18 -635.54 -1.39 -21.02 16 10 C 0.11 4.59 3.22 86.38 0.28 4.87 16 11 C -0.12 -3.99 6.09 29.85 0.18 -3.81 16 12 C 0.49 15.82 8.33 71.24 0.59 16.41 16 13 O -0.55 -21.24 16.74 21.95 0.37 -20.87 16 14 O -0.51 -11.84 13.42 -51.42 -0.69 -12.53 16 15 C 0.48 18.06 7.58 87.66 0.66 18.73 16 16 O -0.61 -24.76 15.44 -3.08 -0.05 -24.81 16 17 C -0.12 -3.47 4.37 29.85 0.13 -3.34 16 18 C 0.15 3.66 4.07 44.96 0.18 3.84 16 19 H 0.11 2.65 7.67 -2.39 -0.02 2.63 16 20 C -0.15 -2.84 7.92 30.37 0.24 -2.60 16 21 C 0.52 14.22 9.85 87.64 0.86 15.08 16 22 O -0.57 -20.18 18.03 -3.03 -0.05 -20.24 16 23 N -0.74 -19.16 7.24 -455.21 -3.29 -22.45 16 24 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 25 H 0.06 2.78 3.61 -2.38 -0.01 2.77 16 26 H 0.07 2.80 7.58 -2.39 -0.02 2.78 16 27 H 0.12 3.73 8.14 -2.39 -0.02 3.72 16 28 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 29 H 0.43 5.77 9.10 -74.06 -0.67 5.10 16 30 H 0.13 3.29 8.10 -2.39 -0.02 3.27 16 31 H 0.10 2.80 7.66 -2.38 -0.02 2.78 16 32 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.14 2.06 8.01 -2.39 -0.02 2.04 16 34 H 0.40 10.35 8.96 -92.71 -0.83 9.52 16 Total: -1.00 -65.70 299.34 0.88 -64.82 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.38 Total: 23.35 kcal Atomic # 6 Polarization: 32.75 SS G_CDS: 4.34 Total: 37.09 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.38 Total: -88.52 kcal Atomic # 8 Polarization: -78.02 SS G_CDS: -0.43 Total: -78.45 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.72 Total: 41.71 kcal Total: -65.70 0.88 -64.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.156 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds