Wall clock time and date at job start Mon Mar 30 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99558 * 2 1 4 4 H 1.48502 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47114 * 299.99638 * 3 2 1 6 6 H 1.48496 * 109.47884 * 59.99804 * 3 2 1 7 7 C 1.38945 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 157.80563 * 7 2 1 9 9 N 1.37094 * 120.00369 * 337.79966 * 7 2 1 10 10 C 1.46506 * 120.00305 * 326.02298 * 9 7 2 11 11 C 1.52994 * 109.46717 * 264.53645 * 10 9 7 12 12 C 1.50704 * 109.46775 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00243 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00168 * 179.97438 * 12 11 10 15 15 C 1.34779 * 120.00044 * 146.01740 * 9 7 2 16 16 O 1.21290 * 120.00089 * 180.02562 * 15 9 7 17 17 C 1.50702 * 119.99717 * 0.02562 * 15 9 7 18 18 C 1.53003 * 109.46919 * 179.97438 * 17 15 9 19 19 H 1.08999 * 113.22223 * 317.79288 * 18 17 15 20 20 C 1.53203 * 114.12119 * 185.00161 * 18 17 15 21 21 C 1.50932 * 89.01663 * 246.09344 * 20 18 17 22 22 O 1.21284 * 135.56748 * 179.97438 * 21 20 18 23 23 N 1.35081 * 88.86559 * 0.23392 * 21 20 18 24 24 H 0.97001 * 120.00289 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46792 * 24.53560 * 10 9 7 26 26 H 1.08997 * 109.47026 * 144.53340 * 10 9 7 27 27 H 1.08999 * 109.47420 * 299.99530 * 11 10 9 28 28 H 1.09005 * 109.47576 * 60.00424 * 11 10 9 29 29 H 0.96696 * 117.00229 * 180.02562 * 14 12 11 30 30 H 1.09002 * 109.47188 * 59.99882 * 17 15 9 31 31 H 1.09000 * 109.47248 * 299.99954 * 17 15 9 32 32 H 1.08998 * 113.27545 * 131.08439 * 20 18 17 33 33 H 1.09005 * 113.43458 * 1.13174 * 20 18 17 34 34 H 0.96996 * 130.88261 * 179.71495 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0289 -1.2381 -0.3528 9 7 1.3997 -2.3464 0.4496 10 6 0.4287 -2.2774 1.5446 11 6 1.1318 -2.5801 2.8693 12 6 0.1332 -2.5085 3.9957 13 8 -1.0223 -2.2431 3.7628 14 8 0.5272 -2.7405 5.2577 15 6 1.6939 -3.5338 -0.1162 16 8 1.1546 -4.5450 0.2808 17 6 2.6929 -3.6048 -1.2423 18 6 2.8430 -5.0570 -1.7000 19 1 2.8853 -5.7661 -0.8732 20 6 3.9254 -5.2697 -2.7631 21 6 2.8465 -5.6475 -3.7487 22 8 2.8170 -5.9855 -4.9131 23 7 1.9274 -5.4422 -2.7803 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0047 -1.2781 1.5833 26 1 -0.3609 -3.0097 1.3767 27 1 1.5653 -3.5794 2.8306 28 1 1.9214 -1.8477 3.0373 29 1 -0.1493 -2.6835 5.9464 30 1 3.6570 -3.2317 -0.8967 31 1 2.3449 -2.9948 -2.0759 32 1 4.6026 -6.0914 -2.5299 33 1 4.4540 -4.3553 -3.0327 34 1 0.9610 -5.5236 -2.7947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:04 Heat of formation + Delta-G solvation = -136.824111 kcal Electronic energy + Delta-G solvation = -20733.099752 eV Core-core repulsion = 17246.059355 eV Total energy + Delta-G solvation = -3487.040397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52919 -39.87555 -38.56766 -36.49140 -35.84376 -35.02929 -32.08966 -31.18905 -29.66475 -27.79348 -25.32755 -24.24815 -22.27548 -20.53416 -19.30140 -19.15652 -17.85579 -17.24343 -16.95139 -16.28714 -16.14747 -15.90428 -15.46868 -15.39474 -14.60260 -14.14265 -14.12455 -13.13311 -13.04290 -12.76783 -12.52203 -12.43047 -11.99154 -11.63547 -11.49490 -11.29100 -11.23696 -11.17972 -10.94036 -10.80920 -10.48669 -10.21344 -10.13439 -9.78003 -9.31297 -8.96531 -8.63933 -7.77297 -6.54296 -4.24058 2.61206 2.70167 3.00165 3.13098 3.15647 3.34585 3.52579 3.72782 3.98911 4.31663 4.46950 4.80907 4.97621 5.15681 5.49756 5.52948 5.64139 5.72637 5.85939 5.98322 6.03211 6.19394 6.26990 6.46683 6.71740 6.75849 6.80132 7.09903 7.19714 7.33169 7.69526 8.16334 8.25155 8.56803 8.89265 9.28907 9.71859 10.46962 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.006046 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.053125 B = 4629.791167 C = 6007.566481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.434 5.434 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.482 3.518 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.467 3.533 16 O -0.605 6.605 17 C -0.126 4.126 18 C 0.158 3.842 19 H 0.110 0.890 20 C -0.187 4.187 21 C 0.533 3.467 22 O -0.521 6.521 23 N -0.730 5.730 24 H 0.273 0.727 25 H 0.118 0.882 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.401 0.599 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.535 -2.984 4.233 8.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.163 4.163 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.480 4.480 8 H 0.113 0.887 9 N -0.152 5.152 10 C 0.001 3.999 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.257 3.743 16 O -0.492 6.492 17 C -0.167 4.167 18 C 0.054 3.946 19 H 0.128 0.872 20 C -0.227 4.227 21 C 0.317 3.683 22 O -0.397 6.397 23 N -0.387 5.387 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.259 0.741 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.084 -3.438 3.422 7.781 hybrid contribution -0.643 1.097 0.613 1.412 sum 5.441 -2.341 4.035 7.167 Atomic orbital electron populations 1.69940 1.06327 1.28175 1.43908 1.25391 0.95061 1.00119 0.95702 0.86109 0.80093 0.81763 0.78181 1.18959 1.20595 1.20414 1.19486 0.97390 0.85282 1.45805 0.88671 1.43438 1.37931 1.05802 1.28022 1.21203 0.90769 1.05764 0.82130 1.21853 0.97735 1.05053 0.91717 1.23781 0.89112 0.71738 0.82904 1.90709 1.20803 1.44291 1.84338 1.84586 1.46830 1.83764 1.18459 1.20326 0.85587 0.84095 0.84315 1.90550 1.56753 1.35369 1.66545 1.21629 1.00807 0.94776 0.99487 1.22055 0.84513 0.97018 0.91044 0.87225 1.23997 0.99262 1.04585 0.94847 1.21450 0.86567 0.75075 0.85162 1.90748 1.84589 1.49810 1.14531 1.48851 1.09510 1.68072 1.12226 0.91697 0.86454 0.91813 0.88308 0.87837 0.74091 0.88209 0.88441 0.87537 0.87185 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.34 11.34 55.50 0.63 -20.71 16 2 C 0.04 1.04 4.92 -17.47 -0.09 0.96 16 3 Si 0.91 17.97 29.61 -169.99 -5.03 12.94 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.35 -7.92 8.70 -14.94 -0.13 -8.05 16 8 H 0.10 1.97 6.97 -52.49 -0.37 1.61 16 9 N -0.43 -9.72 2.56 -114.81 -0.29 -10.02 16 10 C 0.13 2.82 4.19 -4.04 -0.02 2.80 16 11 C -0.12 -2.29 6.10 -27.88 -0.17 -2.46 16 12 C 0.48 8.47 8.33 36.01 0.30 8.77 16 13 O -0.51 -10.65 16.74 -18.75 -0.31 -10.96 16 14 O -0.52 -7.11 13.42 -39.26 -0.53 -7.64 16 15 C 0.47 9.77 7.60 -10.98 -0.08 9.68 16 16 O -0.61 -13.80 15.40 5.55 0.09 -13.71 16 17 C -0.13 -2.05 4.36 -27.88 -0.12 -2.17 16 18 C 0.16 2.22 4.24 -67.69 -0.29 1.93 16 19 H 0.11 1.55 7.63 -51.93 -0.40 1.15 16 20 C -0.19 -2.16 7.71 -28.82 -0.22 -2.38 16 21 C 0.53 8.23 10.03 -10.73 -0.11 8.12 16 22 O -0.52 -9.87 18.03 5.55 0.10 -9.77 16 23 N -0.73 -11.04 6.98 -84.14 -0.59 -11.63 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.12 2.91 5.31 -51.93 -0.28 2.63 16 26 H 0.06 1.55 7.55 -51.93 -0.39 1.16 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 29 H 0.40 3.53 9.10 45.56 0.41 3.95 16 30 H 0.10 1.40 7.65 -51.93 -0.40 1.00 16 31 H 0.10 1.68 8.09 -51.93 -0.42 1.26 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 1.11 8.01 -51.93 -0.42 0.70 16 34 H 0.39 6.02 8.96 -40.82 -0.37 5.65 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -30.85 303.57 -5.31 -36.16 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -3.02 Total: 13.56 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: -0.92 Total: 17.20 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.25 Total: -42.35 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.66 Total: -42.07 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.85 -5.31 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.667 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds