Wall clock time and date at job start Mon Mar 30 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99558 * 2 1 4 4 H 1.48502 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47114 * 299.99638 * 3 2 1 6 6 H 1.48496 * 109.47884 * 59.99804 * 3 2 1 7 7 C 1.38945 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 157.80563 * 7 2 1 9 9 N 1.37094 * 120.00369 * 337.79966 * 7 2 1 10 10 C 1.46506 * 120.00305 * 326.02298 * 9 7 2 11 11 C 1.52994 * 109.46717 * 264.53645 * 10 9 7 12 12 C 1.50704 * 109.46775 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00243 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00168 * 179.97438 * 12 11 10 15 15 C 1.34779 * 120.00044 * 146.01740 * 9 7 2 16 16 O 1.21290 * 120.00089 * 180.02562 * 15 9 7 17 17 C 1.50702 * 119.99717 * 0.02562 * 15 9 7 18 18 C 1.53003 * 109.46919 * 179.97438 * 17 15 9 19 19 H 1.08999 * 113.22223 * 317.79288 * 18 17 15 20 20 C 1.53203 * 114.12119 * 185.00161 * 18 17 15 21 21 C 1.50932 * 89.01663 * 246.09344 * 20 18 17 22 22 O 1.21284 * 135.56748 * 179.97438 * 21 20 18 23 23 N 1.35081 * 88.86559 * 0.23392 * 21 20 18 24 24 H 0.97001 * 120.00289 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46792 * 24.53560 * 10 9 7 26 26 H 1.08997 * 109.47026 * 144.53340 * 10 9 7 27 27 H 1.08999 * 109.47420 * 299.99530 * 11 10 9 28 28 H 1.09005 * 109.47576 * 60.00424 * 11 10 9 29 29 H 0.96696 * 117.00229 * 180.02562 * 14 12 11 30 30 H 1.09002 * 109.47188 * 59.99882 * 17 15 9 31 31 H 1.09000 * 109.47248 * 299.99954 * 17 15 9 32 32 H 1.08998 * 113.27545 * 131.08439 * 20 18 17 33 33 H 1.09005 * 113.43458 * 1.13174 * 20 18 17 34 34 H 0.96996 * 130.88261 * 179.71495 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0289 -1.2381 -0.3528 9 7 1.3997 -2.3464 0.4496 10 6 0.4287 -2.2774 1.5446 11 6 1.1318 -2.5801 2.8693 12 6 0.1332 -2.5085 3.9957 13 8 -1.0223 -2.2431 3.7628 14 8 0.5272 -2.7405 5.2577 15 6 1.6939 -3.5338 -0.1162 16 8 1.1546 -4.5450 0.2808 17 6 2.6929 -3.6048 -1.2423 18 6 2.8430 -5.0570 -1.7000 19 1 2.8853 -5.7661 -0.8732 20 6 3.9254 -5.2697 -2.7631 21 6 2.8465 -5.6475 -3.7487 22 8 2.8170 -5.9855 -4.9131 23 7 1.9274 -5.4422 -2.7803 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0047 -1.2781 1.5833 26 1 -0.3609 -3.0097 1.3767 27 1 1.5653 -3.5794 2.8306 28 1 1.9214 -1.8477 3.0373 29 1 -0.1493 -2.6835 5.9464 30 1 3.6570 -3.2317 -0.8967 31 1 2.3449 -2.9948 -2.0759 32 1 4.6026 -6.0914 -2.5299 33 1 4.4540 -4.3553 -3.0327 34 1 0.9610 -5.5236 -2.7947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:04 Heat of formation + Delta-G solvation = -161.400724 kcal Electronic energy + Delta-G solvation = -20734.165474 eV Core-core repulsion = 17246.059355 eV Total energy + Delta-G solvation = -3488.106119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75238 -41.28318 -40.17221 -37.81431 -37.18298 -36.71078 -33.79676 -32.77226 -31.03697 -28.89971 -27.05155 -25.78171 -23.58573 -21.95785 -20.95933 -20.27046 -19.27364 -18.66366 -18.32115 -17.67546 -17.58450 -17.35569 -16.93297 -16.73061 -16.18656 -15.72145 -15.64492 -14.61412 -14.45160 -14.25894 -13.95374 -13.72620 -13.42618 -13.08090 -12.92682 -12.70311 -12.59966 -12.54481 -12.34454 -12.29787 -12.01413 -11.86473 -11.64982 -11.04654 -10.99257 -10.38095 -10.16774 -9.53969 -8.28701 -6.02770 1.20355 1.44677 1.51103 1.54267 1.65312 1.97583 2.09725 2.38324 2.40333 3.03223 3.10834 3.23977 3.79594 4.01734 4.02521 4.15605 4.30331 4.51624 4.66899 4.70071 4.79882 4.88189 4.90838 5.03497 5.26744 5.39779 5.54379 5.57005 5.61810 5.86819 5.99373 6.41451 7.00952 7.15047 7.34756 7.60049 8.02446 8.73687 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.006046 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.053125 B = 4629.791167 C = 6007.566481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.243 1.243 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.352 4.352 8 H 0.119 0.881 9 N -0.449 5.449 10 C 0.130 3.870 11 C -0.115 4.115 12 C 0.492 3.508 13 O -0.553 6.553 14 O -0.507 6.507 15 C 0.459 3.541 16 O -0.629 6.629 17 C -0.116 4.116 18 C 0.158 3.842 19 H 0.113 0.887 20 C -0.156 4.156 21 C 0.522 3.478 22 O -0.563 6.563 23 N -0.738 5.738 24 H 0.269 0.731 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.426 0.574 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -2.880 4.953 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.205 4.205 3 Si 0.802 3.198 4 H -0.166 1.166 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.479 4.479 8 H 0.136 0.864 9 N -0.167 5.167 10 C 0.005 3.995 11 C -0.154 4.154 12 C 0.336 3.664 13 O -0.444 6.444 14 O -0.321 6.321 15 C 0.250 3.750 16 O -0.517 6.517 17 C -0.157 4.157 18 C 0.054 3.946 19 H 0.130 0.870 20 C -0.196 4.196 21 C 0.309 3.691 22 O -0.442 6.442 23 N -0.393 5.393 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.048 0.952 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.288 0.712 30 H 0.150 0.850 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.047 -3.345 4.192 10.517 hybrid contribution -1.626 0.982 0.460 1.954 sum 7.421 -2.364 4.652 9.072 Atomic orbital electron populations 1.70080 1.08145 1.28557 1.46301 1.26230 0.95470 1.03252 0.95531 0.85109 0.79978 0.77605 0.77140 1.16592 1.21500 1.21215 1.19957 0.98108 0.85108 1.44727 0.86398 1.43683 1.37984 1.06524 1.28530 1.20930 0.90812 1.03147 0.84623 1.21624 0.97707 1.05826 0.90196 1.23500 0.88066 0.70881 0.83947 1.90710 1.22261 1.46251 1.85149 1.84503 1.47433 1.82672 1.17448 1.21166 0.85868 0.83195 0.84800 1.90532 1.57741 1.36052 1.67406 1.21625 1.00669 0.96306 0.97062 1.22083 0.85442 0.95635 0.91466 0.86970 1.23899 0.97921 1.06746 0.90994 1.22145 0.87933 0.74168 0.84828 1.90720 1.85457 1.51572 1.16430 1.49164 1.09494 1.67798 1.12857 0.92174 0.88959 0.95217 0.87536 0.86252 0.71241 0.85010 0.89315 0.84158 0.84735 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.15 11.34 21.66 0.25 -45.91 16 2 C 0.00 -0.08 4.92 84.92 0.42 0.34 16 3 Si 0.98 36.12 29.61 68.60 2.03 38.15 16 4 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 5 H -0.29 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.29 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.35 -15.36 8.70 84.04 0.73 -14.63 16 8 H 0.12 4.51 6.97 -2.91 -0.02 4.49 16 9 N -0.45 -19.99 2.56 -635.54 -1.63 -21.61 16 10 C 0.13 5.96 4.19 86.38 0.36 6.32 16 11 C -0.11 -4.15 6.10 29.85 0.18 -3.97 16 12 C 0.49 16.95 8.33 71.24 0.59 17.54 16 13 O -0.55 -23.26 16.74 21.96 0.37 -22.89 16 14 O -0.51 -12.55 13.42 -51.42 -0.69 -13.24 16 15 C 0.46 18.80 7.60 87.66 0.67 19.47 16 16 O -0.63 -28.64 15.40 -3.06 -0.05 -28.69 16 17 C -0.12 -3.48 4.36 29.85 0.13 -3.35 16 18 C 0.16 4.02 4.24 45.01 0.19 4.21 16 19 H 0.11 2.88 7.63 -2.39 -0.02 2.86 16 20 C -0.16 -2.99 7.71 30.39 0.23 -2.76 16 21 C 0.52 15.31 10.03 87.68 0.88 16.19 16 22 O -0.56 -21.02 18.03 -3.04 -0.05 -21.08 16 23 N -0.74 -21.59 6.98 -538.33 -3.76 -25.34 16 24 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 25 H 0.09 4.76 5.31 -2.39 -0.01 4.75 16 26 H 0.03 1.52 7.55 -2.39 -0.02 1.50 16 27 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.12 3.92 8.14 -2.38 -0.02 3.90 16 29 H 0.43 6.38 9.10 -74.06 -0.67 5.70 16 30 H 0.13 3.11 7.65 -2.39 -0.02 3.10 16 31 H 0.09 2.88 8.09 -2.39 -0.02 2.86 16 32 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.13 2.03 8.01 -2.38 -0.02 2.01 16 34 H 0.38 11.91 8.96 -92.71 -0.83 11.07 16 Total: -1.00 -69.18 303.57 0.52 -68.66 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.34 Total: 32.59 kcal Atomic # 6 Polarization: 34.98 SS G_CDS: 4.39 Total: 39.36 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.14 Total: -92.86 kcal Atomic # 8 Polarization: -85.47 SS G_CDS: -0.42 Total: -85.90 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -69.18 0.52 -68.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.744 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds