Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00385 * 2 1 4 4 H 1.48500 * 109.47003 * 240.00194 * 3 2 1 5 5 H 1.48509 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47580 * 119.99982 * 3 2 1 7 7 C 1.38949 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00087 * 157.72735 * 7 2 1 9 9 N 1.37100 * 120.00186 * 337.73641 * 7 2 1 10 10 C 1.46501 * 119.99581 * 319.97778 * 9 7 2 11 11 C 1.52993 * 109.47307 * 264.50189 * 10 9 7 12 12 C 1.50704 * 109.46994 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00060 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00052 * 179.97438 * 12 11 10 15 15 C 1.34771 * 120.00270 * 139.98534 * 9 7 2 16 16 O 1.21294 * 120.00306 * 179.97438 * 15 9 7 17 17 C 1.50704 * 120.00146 * 359.97438 * 15 9 7 18 18 H 1.08997 * 115.55790 * 294.87762 * 17 15 9 19 19 C 1.53003 * 117.49869 * 80.56800 * 17 15 9 20 20 C 1.53001 * 60.00066 * 107.48949 * 19 17 15 21 21 H 1.08993 * 117.49808 * 107.48596 * 20 19 17 22 22 C 1.50696 * 117.49947 * 252.51210 * 20 19 17 23 23 N 1.34773 * 120.00160 * 157.92881 * 22 20 19 24 24 O 1.21286 * 120.00101 * 337.92555 * 22 20 19 25 25 H 0.96998 * 119.99919 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46982 * 24.50701 * 10 9 7 27 27 H 1.09003 * 109.46734 * 144.50039 * 10 9 7 28 28 H 1.08996 * 109.47463 * 299.99886 * 11 10 9 29 29 H 1.09003 * 109.47346 * 60.00225 * 11 10 9 30 30 H 0.96703 * 117.00161 * 180.02562 * 14 12 11 31 31 H 1.09002 * 117.49717 * 214.98401 * 19 17 15 32 32 H 1.09006 * 117.49472 * 359.97404 * 19 17 15 33 33 H 0.97001 * 120.00303 * 359.97438 * 23 22 20 34 34 H 0.97000 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0284 -1.2384 -0.3540 9 7 1.4000 -2.3462 0.4509 10 6 0.5323 -2.2979 1.6303 11 6 1.3373 -2.6869 2.8719 12 6 0.4445 -2.6377 4.0851 13 8 -0.7165 -2.3242 3.9685 14 8 0.9390 -2.9433 5.2950 15 6 1.5997 -3.5141 -0.1913 16 8 1.0615 -4.5253 0.2074 17 6 2.4919 -3.5638 -1.4049 18 1 2.1383 -3.0056 -2.2717 19 6 4.0026 -3.6203 -1.1692 20 6 3.2588 -4.8619 -1.6653 21 1 3.4096 -5.1576 -2.7034 22 6 3.0641 -5.9929 -0.6887 23 7 2.0766 -6.8892 -0.8836 24 8 3.7961 -6.0968 0.2728 25 1 -0.4850 0.8400 0.0004 26 1 0.1413 -1.2877 1.7526 27 1 -0.2957 -2.9948 1.5010 28 1 1.7282 -3.6970 2.7497 29 1 2.1653 -1.9899 3.0012 30 1 0.3280 -2.8979 6.0432 31 1 4.6429 -3.0992 -1.8810 32 1 4.3512 -3.6212 -0.1364 33 1 1.4909 -6.8060 -1.6524 34 1 1.9515 -7.6174 -0.2551 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = -165.727643 kcal Electronic energy + Delta-G solvation = -21357.969593 eV Core-core repulsion = 17869.675844 eV Total energy + Delta-G solvation = -3488.293748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46877 -41.09069 -39.73586 -37.34668 -36.93659 -36.44315 -34.34858 -33.84113 -32.28285 -27.06546 -26.79024 -25.23976 -23.93428 -22.07618 -21.15957 -20.66533 -19.32290 -18.92988 -17.99404 -17.79654 -17.52488 -17.22001 -16.90039 -16.62141 -16.02766 -15.87370 -15.19457 -14.90527 -14.69385 -14.36302 -14.01227 -13.96247 -13.44548 -13.07785 -12.89080 -12.81741 -12.60974 -12.51458 -12.12522 -11.98036 -11.71151 -11.45952 -11.33003 -10.97162 -10.88165 -10.44908 -10.26787 -9.48975 -8.29811 -6.05857 1.12920 1.46375 1.53607 1.60870 1.73215 1.90103 2.05441 2.38458 2.58771 3.04210 3.06768 3.15724 3.91970 3.98125 4.00074 4.04118 4.11725 4.36011 4.45073 4.62087 4.68459 4.89286 4.99319 5.00169 5.23553 5.27596 5.52407 5.54980 6.01819 6.05656 6.43192 6.64410 6.95413 7.15511 7.53016 7.57716 8.01951 8.74575 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.008650 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.301928 B = 3236.340129 C = 4784.153059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.007 3.993 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.354 4.354 8 H 0.107 0.893 9 N -0.443 5.443 10 C 0.144 3.856 11 C -0.118 4.118 12 C 0.496 3.504 13 O -0.547 6.547 14 O -0.507 6.507 15 C 0.482 3.518 16 O -0.614 6.614 17 C -0.135 4.135 18 H 0.142 0.858 19 C -0.120 4.120 20 C -0.167 4.167 21 H 0.172 0.828 22 C 0.556 3.444 23 N -0.822 5.822 24 O -0.605 6.605 25 H 0.270 0.730 26 H 0.083 0.917 27 H 0.035 0.965 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.427 0.573 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -4.438 -1.714 7.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.179 1.179 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.481 4.481 8 H 0.125 0.875 9 N -0.161 5.161 10 C 0.020 3.980 11 C -0.156 4.156 12 C 0.339 3.661 13 O -0.438 6.438 14 O -0.321 6.321 15 C 0.272 3.728 16 O -0.501 6.501 17 C -0.156 4.156 18 H 0.160 0.840 19 C -0.158 4.158 20 C -0.188 4.188 21 H 0.190 0.810 22 C 0.342 3.658 23 N -0.382 5.382 24 O -0.487 6.487 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.289 0.711 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.242 0.758 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.528 -4.630 -1.336 7.334 hybrid contribution -1.031 0.644 0.597 1.355 sum 4.497 -3.986 -0.738 6.054 Atomic orbital electron populations 1.70114 1.08031 1.28819 1.45657 1.26249 0.95452 1.03053 0.94977 0.85259 0.78082 0.76937 0.79814 1.17930 1.21734 1.19328 1.19730 0.97831 0.85125 1.45434 0.87530 1.43474 1.42556 1.07510 1.22513 1.20754 0.91497 1.02083 0.83710 1.21627 0.99209 1.04971 0.89825 1.23326 0.86659 0.71220 0.84858 1.90697 1.20332 1.45866 1.86922 1.84516 1.48353 1.81249 1.17971 1.20380 0.83953 0.83702 0.84762 1.90524 1.54449 1.35454 1.69707 1.21928 0.94897 0.99806 0.98975 0.84006 1.22968 0.92446 0.97318 1.03041 1.22459 1.06597 0.88100 1.01630 0.81045 1.19810 0.79250 0.82175 0.84578 1.43372 1.33521 1.30167 1.31137 1.90638 1.48897 1.76205 1.32982 0.92046 0.89858 0.94687 0.88834 0.86613 0.71106 0.83968 0.90409 0.75841 0.76976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.90 11.80 21.66 0.26 -46.64 16 2 C 0.01 0.33 4.85 84.93 0.41 0.74 16 3 Si 0.98 37.66 29.61 68.60 2.03 39.69 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 5 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.35 -16.71 8.55 84.04 0.72 -15.99 16 8 H 0.11 4.65 6.92 -2.91 -0.02 4.63 16 9 N -0.44 -21.46 2.51 -635.53 -1.60 -23.06 16 10 C 0.14 7.06 4.18 86.38 0.36 7.42 16 11 C -0.12 -4.82 6.10 29.85 0.18 -4.64 16 12 C 0.50 18.59 8.33 71.24 0.59 19.18 16 13 O -0.55 -23.93 16.74 21.97 0.37 -23.56 16 14 O -0.51 -14.22 13.42 -51.43 -0.69 -14.91 16 15 C 0.48 22.18 7.03 87.66 0.62 22.79 16 16 O -0.61 -30.31 14.13 -3.07 -0.04 -30.35 16 17 C -0.13 -4.78 4.82 -11.54 -0.06 -4.84 16 18 H 0.14 4.64 8.14 -2.39 -0.02 4.63 16 19 C -0.12 -3.68 9.09 30.60 0.28 -3.40 16 20 C -0.17 -4.88 6.18 -11.54 -0.07 -4.95 16 21 H 0.17 3.36 8.14 -2.39 -0.02 3.34 16 22 C 0.56 19.63 5.65 87.66 0.50 20.13 16 23 N -0.82 -23.09 8.26 -173.54 -1.43 -24.52 16 24 O -0.60 -26.62 17.33 -3.05 -0.05 -26.67 16 25 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 26 H 0.08 4.44 5.79 -2.38 -0.01 4.42 16 27 H 0.03 1.87 7.55 -2.39 -0.02 1.85 16 28 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 30 H 0.43 7.42 9.10 -74.06 -0.67 6.75 16 31 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.08 2.84 7.85 -2.38 -0.02 2.82 16 33 H 0.41 9.25 8.83 -92.71 -0.82 8.44 16 34 H 0.40 10.52 8.93 -92.71 -0.83 9.69 16 Total: -1.00 -72.54 303.90 1.23 -71.31 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -1.14 Total: 42.27 kcal Atomic # 6 Polarization: 32.91 SS G_CDS: 3.53 Total: 36.44 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -2.77 Total: -94.22 kcal Atomic # 8 Polarization: -95.07 SS G_CDS: -0.42 Total: -95.49 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -72.54 1.23 -71.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.423 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds