Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.53310 * 2 1 4 4 C 1.53000 * 109.46886 * 298.61734 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.20824 * 120.00141 * 0.02562 * 5 4 3 7 7 O 1.34226 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.47308 * 110.59810 * 237.16532 * 2 1 3 9 9 C 1.34523 * 106.61966 * 241.32077 * 8 2 1 10 10 O 1.21538 * 123.77459 * 180.02562 * 9 8 2 11 11 N 1.33795 * 112.45785 * 359.97438 * 9 8 2 12 12 C 1.46504 * 124.17668 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46472 * 89.98527 * 12 11 9 14 14 H 1.07996 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99364 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00584 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99661 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47390 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.47301 * 119.99944 * 17 15 13 20 20 H 1.48500 * 109.47467 * 239.99911 * 17 15 13 21 21 C 1.34766 * 111.64572 * 0.02562 * 11 9 8 22 22 O 1.21230 * 127.16143 * 180.02562 * 21 11 9 23 23 H 1.09007 * 109.47056 * 60.00556 * 1 2 3 24 24 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47540 * 300.00670 * 1 2 3 26 26 H 1.09001 * 109.46652 * 178.62079 * 3 2 1 27 27 H 1.08992 * 109.47514 * 58.62169 * 3 2 1 28 28 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 29 29 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 30 30 H 0.96704 * 117.00221 * 179.97438 * 7 5 4 31 31 H 0.97001 * 126.69360 * 61.29087 * 8 2 1 32 32 H 1.09004 * 109.46772 * 209.97953 * 12 11 9 33 33 H 1.08998 * 109.47446 * 329.98292 * 12 11 9 34 34 H 0.97003 * 120.00465 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5985 2.1527 -1.2663 5 6 2.1276 3.5638 -1.2666 6 8 2.8096 3.9535 -0.3485 7 8 1.8413 4.3877 -2.2869 8 7 2.0483 -0.7477 -1.1586 9 6 2.7627 -1.7752 -0.6652 10 8 3.3327 -2.5958 -1.3572 11 7 2.7766 -1.7922 0.6726 12 6 3.4769 -2.7977 1.4756 13 6 4.8838 -2.3315 1.7487 14 1 5.2224 -1.3815 1.3624 15 6 5.7388 -3.1183 2.4909 16 7 5.3266 -4.2754 2.9609 17 14 7.4828 -2.5408 2.8289 18 1 7.6973 -1.2156 2.1940 19 1 7.6915 -2.4275 4.2949 20 1 8.4466 -3.5205 2.2661 21 6 2.0669 -0.7702 1.1902 22 8 1.8943 -0.5185 2.3634 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1562 1.4126 0.0247 27 1 1.6931 1.9608 0.8773 28 1 1.9721 1.6247 -2.1437 29 1 0.5090 2.1729 -1.2910 30 1 2.2027 5.2835 -2.2425 31 1 1.9024 -0.5399 -2.0948 32 1 2.9512 -2.9390 2.4200 33 1 3.5062 -3.7416 0.9312 34 1 5.9281 -4.8288 3.4833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609820399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = -143.274373 kcal Electronic energy + Delta-G solvation = -21127.196688 eV Core-core repulsion = 17639.876587 eV Total energy + Delta-G solvation = -3487.320101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.99431 -40.43784 -37.95974 -36.78746 -36.22501 -34.89396 -33.15386 -32.08862 -29.95784 -27.86755 -26.28216 -24.02030 -23.12783 -21.78847 -20.28425 -19.89819 -18.36706 -17.41106 -16.98282 -16.81551 -16.45743 -15.63793 -15.56761 -15.19988 -14.91156 -14.51151 -13.90856 -13.73021 -13.60423 -13.19282 -13.04914 -12.51223 -12.31295 -12.21776 -11.86262 -11.73452 -11.54320 -11.26563 -11.10271 -10.82766 -10.77108 -10.42916 -10.02267 -9.89733 -9.49088 -9.24240 -8.58804 -8.51678 -6.14171 -4.19220 1.95760 2.15746 2.71688 2.93688 3.29470 3.35921 3.41076 3.54828 3.74142 4.19380 4.40535 4.50799 4.61737 4.64867 4.83337 5.07909 5.21744 5.22521 5.43909 5.52914 5.64435 5.80619 5.93907 5.99593 6.24386 6.56921 7.01835 7.11522 7.20625 7.62422 7.79094 7.92847 8.02199 8.06490 8.70971 8.85789 9.45904 10.95303 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.005474 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.286484 B = 5114.231242 C = 5666.688021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 C -0.104 4.104 4 C -0.112 4.112 5 C 0.478 3.522 6 O -0.509 6.509 7 O -0.520 6.520 8 N -0.735 5.735 9 C 0.701 3.299 10 O -0.539 6.539 11 N -0.555 5.555 12 C 0.248 3.752 13 C -0.534 4.534 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.891 5.891 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.529 3.471 22 O -0.468 6.468 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.410 0.590 31 H 0.429 0.571 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 13.796 -10.284 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 C -0.142 4.142 4 C -0.150 4.150 5 C 0.320 3.680 6 O -0.396 6.396 7 O -0.332 6.332 8 N -0.401 5.401 9 C 0.402 3.598 10 O -0.413 6.413 11 N -0.299 5.299 12 C 0.131 3.869 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.313 3.687 22 O -0.338 6.338 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.269 0.731 31 H 0.272 0.728 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.290 12.904 -9.552 19.628 hybrid contribution 1.231 0.942 -0.216 1.565 sum -10.059 13.847 -9.768 19.706 Atomic orbital electron populations 1.22027 0.90815 1.03945 1.03789 1.21421 0.96673 0.93016 0.86225 1.21598 1.03251 0.91616 0.97782 1.21376 1.03605 0.88578 1.01410 1.23445 0.77263 0.88460 0.78842 1.90781 1.35965 1.76803 1.36042 1.84524 1.72808 1.28372 1.47523 1.45713 1.56374 1.29852 1.08192 1.15978 0.79263 0.81915 0.82620 1.90964 1.47761 1.41368 1.61159 1.46827 1.47026 1.28821 1.07226 1.19629 0.91744 0.85440 0.90120 1.21284 0.96169 1.05534 1.34231 0.92138 1.24889 0.99098 0.94643 0.95092 1.69927 1.36440 1.11092 1.35442 0.86340 0.83628 0.78853 0.78047 1.19681 1.20681 1.20691 1.20381 0.78062 0.81014 0.89195 1.90742 1.57621 1.68902 1.16504 0.90664 0.91140 0.89853 0.89448 0.88351 0.87416 0.86859 0.73097 0.72750 0.92947 0.92752 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.66 37.16 0.32 -1.03 16 2 C 0.12 1.52 1.01 -132.09 -0.13 1.39 16 3 C -0.10 -1.20 3.85 -26.73 -0.10 -1.31 16 4 C -0.11 -0.86 5.37 -27.88 -0.15 -1.01 16 5 C 0.48 4.57 8.33 36.01 0.30 4.87 16 6 O -0.51 -6.95 16.74 -18.75 -0.31 -7.26 16 7 O -0.52 -3.60 13.42 -39.25 -0.53 -4.13 16 8 N -0.74 -9.83 5.52 -52.94 -0.29 -10.12 16 9 C 0.70 13.96 8.62 -88.02 -0.76 13.20 16 10 O -0.54 -12.74 17.48 5.33 0.09 -12.64 16 11 N -0.56 -12.20 2.59 -122.02 -0.32 -12.52 16 12 C 0.25 6.58 5.45 -5.19 -0.03 6.55 16 13 C -0.53 -15.39 9.39 -34.44 -0.32 -15.72 16 14 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 17 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.53 10.15 6.99 -10.55 -0.07 10.08 16 22 O -0.47 -10.22 17.76 5.60 0.10 -10.13 16 23 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 28 H 0.11 0.68 7.21 -51.93 -0.37 0.30 16 29 H 0.11 0.56 6.55 -51.93 -0.34 0.22 16 30 H 0.41 1.31 9.10 45.56 0.41 1.73 16 31 H 0.43 4.14 8.26 -40.82 -0.34 3.80 16 32 H 0.05 1.45 8.00 -51.93 -0.42 1.04 16 33 H 0.05 1.53 7.86 -51.93 -0.41 1.12 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -36.94 302.94 -5.05 -42.00 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.03 Total: -0.09 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: -1.05 Total: 18.83 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.13 Total: -48.26 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.65 Total: -34.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.94 -5.05 -42.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609820399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.276 kcal (2) G-P(sol) polarization free energy of solvation -36.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds