Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.53310 * 2 1 4 4 C 1.53000 * 109.46886 * 298.61734 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.20824 * 120.00141 * 0.02562 * 5 4 3 7 7 O 1.34226 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.47308 * 110.59810 * 237.16532 * 2 1 3 9 9 C 1.34523 * 106.61966 * 241.32077 * 8 2 1 10 10 O 1.21538 * 123.77459 * 180.02562 * 9 8 2 11 11 N 1.33795 * 112.45785 * 359.97438 * 9 8 2 12 12 C 1.46504 * 124.17668 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46472 * 89.98527 * 12 11 9 14 14 H 1.07996 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99364 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00584 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99661 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47390 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.47301 * 119.99944 * 17 15 13 20 20 H 1.48500 * 109.47467 * 239.99911 * 17 15 13 21 21 C 1.34766 * 111.64572 * 0.02562 * 11 9 8 22 22 O 1.21230 * 127.16143 * 180.02562 * 21 11 9 23 23 H 1.09007 * 109.47056 * 60.00556 * 1 2 3 24 24 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47540 * 300.00670 * 1 2 3 26 26 H 1.09001 * 109.46652 * 178.62079 * 3 2 1 27 27 H 1.08992 * 109.47514 * 58.62169 * 3 2 1 28 28 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 29 29 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 30 30 H 0.96704 * 117.00221 * 179.97438 * 7 5 4 31 31 H 0.97001 * 126.69360 * 61.29087 * 8 2 1 32 32 H 1.09004 * 109.46772 * 209.97953 * 12 11 9 33 33 H 1.08998 * 109.47446 * 329.98292 * 12 11 9 34 34 H 0.97003 * 120.00465 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5985 2.1527 -1.2663 5 6 2.1276 3.5638 -1.2666 6 8 2.8096 3.9535 -0.3485 7 8 1.8413 4.3877 -2.2869 8 7 2.0483 -0.7477 -1.1586 9 6 2.7627 -1.7752 -0.6652 10 8 3.3327 -2.5958 -1.3572 11 7 2.7766 -1.7922 0.6726 12 6 3.4769 -2.7977 1.4756 13 6 4.8838 -2.3315 1.7487 14 1 5.2224 -1.3815 1.3624 15 6 5.7388 -3.1183 2.4909 16 7 5.3266 -4.2754 2.9609 17 14 7.4828 -2.5408 2.8289 18 1 7.6973 -1.2156 2.1940 19 1 7.6915 -2.4275 4.2949 20 1 8.4466 -3.5205 2.2661 21 6 2.0669 -0.7702 1.1902 22 8 1.8943 -0.5185 2.3634 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1562 1.4126 0.0247 27 1 1.6931 1.9608 0.8773 28 1 1.9721 1.6247 -2.1437 29 1 0.5090 2.1729 -1.2910 30 1 2.2027 5.2835 -2.2425 31 1 1.9024 -0.5399 -2.0948 32 1 2.9512 -2.9390 2.4200 33 1 3.5062 -3.7416 0.9312 34 1 5.9281 -4.8288 3.4833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609820399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = -173.467800 kcal Electronic energy + Delta-G solvation = -21128.505974 eV Core-core repulsion = 17639.876587 eV Total energy + Delta-G solvation = -3488.629386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.47356 -41.19003 -39.58872 -37.99031 -37.06437 -36.63259 -34.98031 -33.53783 -30.88452 -29.87781 -27.20029 -25.77735 -24.74728 -22.92046 -21.42113 -21.28675 -19.13146 -19.02841 -18.78818 -17.77916 -17.38139 -17.15857 -17.10838 -16.67980 -16.54346 -15.91207 -15.40604 -15.15963 -14.75560 -14.45031 -14.04723 -13.93919 -13.71237 -13.33847 -13.17473 -13.08567 -12.73977 -12.68480 -12.49376 -12.42617 -12.10242 -11.97852 -11.70234 -11.61031 -11.04741 -10.73041 -10.67080 -10.38338 -8.35534 -6.50156 0.64433 1.25908 1.33292 1.35504 1.39839 1.50105 2.07241 2.14383 2.27966 2.35156 2.91970 2.97948 3.51101 3.71142 3.78938 4.11930 4.31288 4.45488 4.62818 4.66571 4.75457 4.81087 4.82977 4.94908 5.01976 5.09933 5.24429 5.54502 5.68664 5.81916 5.89794 6.32223 6.47177 6.58062 7.03723 7.15453 7.27671 8.74587 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.005474 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.286484 B = 5114.231242 C = 5666.688021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 C -0.100 4.100 4 C -0.106 4.106 5 C 0.484 3.516 6 O -0.560 6.560 7 O -0.510 6.510 8 N -0.697 5.697 9 C 0.697 3.303 10 O -0.584 6.584 11 N -0.574 5.574 12 C 0.263 3.737 13 C -0.556 4.556 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.920 5.920 17 Si 0.972 3.028 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.269 1.269 21 C 0.513 3.487 22 O -0.503 6.503 23 H 0.127 0.873 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.157 0.843 30 H 0.427 0.573 31 H 0.453 0.547 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 15.867 -12.090 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.049 3.951 3 C -0.139 4.139 4 C -0.142 4.142 5 C 0.328 3.672 6 O -0.451 6.451 7 O -0.323 6.323 8 N -0.365 5.365 9 C 0.398 3.602 10 O -0.460 6.460 11 N -0.318 5.318 12 C 0.143 3.857 13 C -0.595 4.595 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.796 3.204 18 H -0.195 1.195 19 H -0.194 1.194 20 H -0.195 1.195 21 C 0.302 3.698 22 O -0.375 6.375 23 H 0.145 0.855 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.174 0.826 30 H 0.289 0.711 31 H 0.301 0.699 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.494 15.046 -11.427 22.651 hybrid contribution 1.530 0.337 0.343 1.604 sum -10.964 15.383 -11.085 21.902 Atomic orbital electron populations 1.22163 0.86583 1.04657 1.06822 1.21489 0.99237 0.92256 0.82163 1.21513 1.01285 0.90666 1.00410 1.21417 1.06073 0.87194 0.99552 1.23709 0.76062 0.89153 0.78278 1.90783 1.38397 1.77873 1.38079 1.84480 1.72324 1.29412 1.46102 1.45455 1.54105 1.27338 1.09567 1.16097 0.79636 0.82834 0.81664 1.90928 1.49917 1.43462 1.61743 1.46781 1.47588 1.29104 1.08286 1.19016 0.91359 0.85906 0.89422 1.21513 0.97520 1.05459 1.34967 0.93085 1.25822 1.03481 0.94651 0.94531 1.70022 1.38141 1.12018 1.35685 0.85299 0.78252 0.78461 0.78415 1.19533 1.19416 1.19454 1.21538 0.77081 0.80581 0.90646 1.90705 1.58668 1.69584 1.18563 0.85458 0.91712 0.88983 0.92698 0.88514 0.85152 0.82575 0.71149 0.69867 0.95223 0.95397 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.66 71.98 0.62 -1.42 16 2 C 0.14 3.29 1.01 2.99 0.00 3.30 16 3 C -0.10 -2.10 3.85 30.59 0.12 -1.99 16 4 C -0.11 -1.15 5.37 29.85 0.16 -0.99 16 5 C 0.48 7.79 8.33 71.24 0.59 8.38 16 6 O -0.56 -14.64 16.74 21.97 0.37 -14.28 16 7 O -0.51 -5.15 13.42 -51.38 -0.69 -5.84 16 8 N -0.70 -17.08 5.52 -439.82 -2.43 -19.51 16 9 C 0.70 27.99 8.62 179.44 1.55 29.54 16 10 O -0.58 -28.22 17.48 -3.84 -0.07 -28.29 16 11 N -0.57 -26.19 2.59 -777.19 -2.01 -28.20 16 12 C 0.26 14.80 5.45 85.63 0.47 15.26 16 13 C -0.56 -33.43 9.39 25.60 0.24 -33.19 16 14 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 15 C 0.02 0.92 5.46 84.66 0.46 1.38 16 16 N -0.92 -55.93 13.29 21.45 0.28 -55.65 16 17 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C 0.51 20.08 6.99 87.94 0.61 20.69 16 22 O -0.50 -22.75 17.76 -2.88 -0.05 -22.80 16 23 H 0.13 0.55 6.57 -2.38 -0.02 0.54 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 27 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 28 H 0.13 0.91 7.21 -2.39 -0.02 0.90 16 29 H 0.16 0.45 6.55 -2.39 -0.02 0.43 16 30 H 0.43 1.42 9.10 -74.05 -0.67 0.74 16 31 H 0.45 6.93 8.26 -92.71 -0.77 6.16 16 32 H 0.03 1.77 8.00 -2.39 -0.02 1.75 16 33 H 0.03 1.69 7.86 -2.39 -0.02 1.67 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -86.74 302.94 1.99 -84.75 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -0.28 Total: 0.83 kcal Atomic # 6 Polarization: 36.13 SS G_CDS: 4.83 Total: 40.96 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.15 Total: -103.36 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -0.44 Total: -71.21 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -86.74 1.99 -84.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609820399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.715 kcal (2) G-P(sol) polarization free energy of solvation -86.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds