Wall clock time and date at job start Mon Mar 30 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86798 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47036 * 269.99923 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00013 * 3 2 1 6 6 H 1.48500 * 109.47110 * 149.99860 * 3 2 1 7 7 C 1.39082 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00174 * 359.97438 * 7 2 1 9 9 N 1.36826 * 119.99805 * 180.02562 * 7 2 1 10 10 C 1.34771 * 119.99927 * 179.97438 * 9 7 2 11 11 O 1.21606 * 120.00516 * 359.97438 * 10 9 7 12 12 C 1.47614 * 120.00155 * 179.97438 * 10 9 7 13 13 C 1.40154 * 120.87218 * 179.97438 * 12 10 9 14 14 N 1.31938 * 119.00470 * 179.97438 * 13 12 10 15 15 C 1.32687 * 120.90043 * 359.97438 * 14 13 12 16 16 C 1.48308 * 119.03584 * 179.97438 * 15 14 13 17 17 C 1.39322 * 119.72621 * 179.97438 * 16 15 14 18 18 C 1.38483 * 119.06394 * 180.28025 * 17 16 15 19 19 C 1.38716 * 118.50226 * 359.47769 * 18 17 16 20 20 C 1.38415 * 119.35326 * 0.47942 * 19 18 17 21 21 N 1.31644 * 120.89747 * 359.79238 * 20 19 18 22 22 N 1.32670 * 121.92802 * 0.25785 * 15 14 13 23 23 C 1.31948 * 120.90447 * 359.47919 * 22 15 14 24 24 H 0.96995 * 119.99810 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00015 * 359.97438 * 9 7 2 26 26 H 1.07998 * 120.50216 * 359.97438 * 13 12 10 27 27 H 1.08002 * 120.46440 * 359.97438 * 17 16 15 28 28 H 1.08006 * 120.75184 * 179.72463 * 18 17 16 29 29 H 1.07999 * 120.32225 * 180.25332 * 19 18 17 30 30 H 1.08003 * 119.55034 * 179.77013 * 20 19 18 31 31 H 1.07994 * 120.49585 * 180.25495 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0463 -1.4000 5 1 1.4449 2.6527 0.7000 6 1 3.5450 1.4401 0.7001 7 6 2.0088 -1.2045 -0.0005 8 1 1.4688 -2.1398 -0.0005 9 7 3.3771 -1.2045 0.0000 10 6 4.0509 -2.3717 0.0000 11 8 3.4429 -3.4249 0.0000 12 6 5.5270 -2.3718 0.0000 13 6 6.2461 -3.5748 0.0005 14 7 7.5648 -3.5318 0.0000 15 6 8.2088 -2.3717 -0.0015 16 6 9.6919 -2.3717 -0.0015 17 6 10.3828 -1.1619 -0.0037 18 6 11.7675 -1.1779 -0.0095 19 6 12.4153 -2.4044 -0.0019 20 6 11.6654 -3.5678 0.0011 21 7 10.3497 -3.5240 0.0009 22 7 7.5649 -1.2118 0.0025 23 6 6.2462 -1.1687 -0.0021 24 1 -0.4849 0.8400 -0.0004 25 1 3.8621 -0.3645 0.0004 26 1 5.7287 -4.5227 0.0014 27 1 9.8459 -0.2248 -0.0058 28 1 12.3304 -0.2561 -0.0158 29 1 13.4943 -2.4512 -0.0021 30 1 12.1665 -4.5246 0.0032 31 1 5.7288 -0.2208 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113762.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:11 Heat of formation + Delta-G solvation = 59.774996 kcal Electronic energy + Delta-G solvation = -18728.184427 eV Core-core repulsion = 15589.270877 eV Total energy + Delta-G solvation = -3138.913549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04357 -39.92027 -38.26225 -34.46088 -33.66104 -33.12491 -32.53415 -31.96414 -30.38787 -26.22614 -24.86963 -24.34025 -23.12579 -22.45578 -19.99876 -19.06015 -18.06276 -17.52688 -16.52818 -16.13230 -15.81928 -15.23505 -15.12389 -14.96627 -14.00878 -13.96537 -13.71529 -13.46354 -13.35529 -13.21329 -12.97660 -12.54927 -12.00926 -11.45351 -11.34308 -10.82311 -10.71432 -10.28028 -10.21782 -9.97138 -9.77834 -9.60924 -9.09639 -8.83442 -8.73965 -8.51014 -6.68573 -4.06542 0.12838 1.09201 1.23824 1.32274 2.83445 2.88764 2.97385 3.32135 3.43519 3.79356 3.81300 4.04260 4.24900 4.30419 4.56739 4.63921 4.74155 4.84564 4.95959 5.00786 5.01022 5.15348 5.35318 5.58299 5.60443 5.84775 5.93267 6.04535 6.38897 6.49915 7.03638 7.20856 7.76666 7.81320 8.16753 8.24067 8.59710 9.04556 9.51859 10.41635 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034694 B = 0.004047 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.853239 B = 6916.341330 C = 7713.349585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.291 4.291 8 H 0.129 0.871 9 N -0.557 5.557 10 C 0.474 3.526 11 O -0.575 6.575 12 C -0.189 4.189 13 C 0.184 3.816 14 N -0.477 5.477 15 C 0.334 3.666 16 C 0.181 3.819 17 C -0.126 4.126 18 C -0.084 4.084 19 C -0.165 4.165 20 C 0.096 3.904 21 N -0.444 5.444 22 N -0.502 5.502 23 C 0.149 3.851 24 H 0.282 0.718 25 H 0.372 0.628 26 H 0.183 0.817 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.455 2.070 -0.048 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.163 4.163 3 Si 0.704 3.296 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.420 4.420 8 H 0.146 0.854 9 N -0.193 5.193 10 C 0.262 3.738 11 O -0.460 6.460 12 C -0.197 4.197 13 C 0.015 3.985 14 N -0.190 5.190 15 C 0.068 3.932 16 C 0.043 3.957 17 C -0.148 4.148 18 C -0.110 4.110 19 C -0.186 4.186 20 C -0.063 4.063 21 N -0.153 5.153 22 N -0.216 5.216 23 C -0.019 4.019 24 H 0.093 0.907 25 H 0.206 0.794 26 H 0.200 0.800 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 21.255 0.729 -0.040 21.267 hybrid contribution 0.018 2.232 0.023 2.232 sum 21.273 2.961 -0.017 21.478 Atomic orbital electron populations 1.69583 1.05926 1.28615 1.44560 1.25207 0.95669 0.98594 0.96855 0.86651 0.80054 0.83286 0.79585 1.18829 1.19371 1.19051 1.19663 0.79049 0.97214 1.46063 0.85358 1.42250 1.07821 1.06393 1.62791 1.17035 0.84668 0.84818 0.87323 1.90676 1.68401 1.30346 1.56568 1.22226 0.97749 0.96136 1.03628 1.23470 0.88106 0.98723 0.88251 1.68472 1.09558 1.28885 1.12042 1.20713 0.92797 0.84445 0.95219 1.18752 0.89445 0.89131 0.98340 1.22198 0.94613 0.99577 0.98402 1.21579 0.94079 0.98637 0.96677 1.22323 1.01610 0.93650 1.01000 1.22822 0.88938 0.98698 0.95844 1.67581 1.09667 1.28595 1.09446 1.68022 1.10199 1.29350 1.14076 1.23275 0.88836 0.98157 0.91647 0.90746 0.79429 0.80006 0.83281 0.84355 0.84572 0.82275 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.86 13.95 55.50 0.77 -22.09 16 2 C 0.04 1.11 5.50 -17.45 -0.10 1.01 16 3 Si 0.88 17.64 27.74 -169.99 -4.71 12.93 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -4.79 6.52 56.52 0.37 -4.42 16 7 C -0.29 -7.68 10.16 -15.01 -0.15 -7.83 16 8 H 0.13 3.86 7.38 -52.49 -0.39 3.47 16 9 N -0.56 -12.62 5.04 -11.91 -0.06 -12.68 16 10 C 0.47 10.70 7.73 -12.44 -0.10 10.60 16 11 O -0.57 -15.08 16.01 5.27 0.08 -14.99 16 12 C -0.19 -3.53 5.91 -104.63 -0.62 -4.14 16 13 C 0.18 3.30 10.87 -16.79 -0.18 3.12 16 14 N -0.48 -8.59 10.07 -10.79 -0.11 -8.69 16 15 C 0.33 5.66 7.57 -156.80 -1.19 4.47 16 16 C 0.18 2.67 6.75 -82.95 -0.56 2.11 16 17 C -0.13 -1.46 9.60 -39.09 -0.38 -1.84 16 18 C -0.08 -0.72 10.17 -39.31 -0.40 -1.12 16 19 C -0.17 -1.33 10.11 -39.34 -0.40 -1.72 16 20 C 0.10 0.98 11.18 -17.57 -0.20 0.79 16 21 N -0.44 -6.39 10.02 -9.77 -0.10 -6.49 16 22 N -0.50 -8.15 9.39 -10.79 -0.10 -8.25 16 23 C 0.15 2.46 10.81 -16.78 -0.18 2.28 16 24 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.37 7.27 3.88 -40.82 -0.16 7.11 16 26 H 0.18 3.09 7.74 -52.49 -0.41 2.68 16 27 H 0.15 1.61 7.49 -52.49 -0.39 1.22 16 28 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.17 2.35 6.53 -52.49 -0.34 2.01 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -31.58 284.81 -6.50 -38.08 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -2.12 Total: 10.17 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -4.44 Total: 7.73 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.41 Total: -58.21 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.08 Total: -14.99 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -4.71 Total: 12.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.58 -6.50 -38.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113762.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.856 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds