Wall clock time and date at job start Mon Mar 30 2020 00:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86798 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47036 * 269.99923 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00013 * 3 2 1 6 6 H 1.48500 * 109.47110 * 149.99860 * 3 2 1 7 7 C 1.39082 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00174 * 359.97438 * 7 2 1 9 9 N 1.36826 * 119.99805 * 180.02562 * 7 2 1 10 10 C 1.34771 * 119.99927 * 179.97438 * 9 7 2 11 11 O 1.21606 * 120.00516 * 359.97438 * 10 9 7 12 12 C 1.47614 * 120.00155 * 179.97438 * 10 9 7 13 13 C 1.40154 * 120.87218 * 179.97438 * 12 10 9 14 14 N 1.31938 * 119.00470 * 179.97438 * 13 12 10 15 15 C 1.32687 * 120.90043 * 359.97438 * 14 13 12 16 16 C 1.48308 * 119.03584 * 179.97438 * 15 14 13 17 17 C 1.39322 * 119.72621 * 179.97438 * 16 15 14 18 18 C 1.38483 * 119.06394 * 180.28025 * 17 16 15 19 19 C 1.38716 * 118.50226 * 359.47769 * 18 17 16 20 20 C 1.38415 * 119.35326 * 0.47942 * 19 18 17 21 21 N 1.31644 * 120.89747 * 359.79238 * 20 19 18 22 22 N 1.32670 * 121.92802 * 0.25785 * 15 14 13 23 23 C 1.31948 * 120.90447 * 359.47919 * 22 15 14 24 24 H 0.96995 * 119.99810 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00015 * 359.97438 * 9 7 2 26 26 H 1.07998 * 120.50216 * 359.97438 * 13 12 10 27 27 H 1.08002 * 120.46440 * 359.97438 * 17 16 15 28 28 H 1.08006 * 120.75184 * 179.72463 * 18 17 16 29 29 H 1.07999 * 120.32225 * 180.25332 * 19 18 17 30 30 H 1.08003 * 119.55034 * 179.77013 * 20 19 18 31 31 H 1.07994 * 120.49585 * 180.25495 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0463 -1.4000 5 1 1.4449 2.6527 0.7000 6 1 3.5450 1.4401 0.7001 7 6 2.0088 -1.2045 -0.0005 8 1 1.4688 -2.1398 -0.0005 9 7 3.3771 -1.2045 0.0000 10 6 4.0509 -2.3717 0.0000 11 8 3.4429 -3.4249 0.0000 12 6 5.5270 -2.3718 0.0000 13 6 6.2461 -3.5748 0.0005 14 7 7.5648 -3.5318 0.0000 15 6 8.2088 -2.3717 -0.0015 16 6 9.6919 -2.3717 -0.0015 17 6 10.3828 -1.1619 -0.0037 18 6 11.7675 -1.1779 -0.0095 19 6 12.4153 -2.4044 -0.0019 20 6 11.6654 -3.5678 0.0011 21 7 10.3497 -3.5240 0.0009 22 7 7.5649 -1.2118 0.0025 23 6 6.2462 -1.1687 -0.0021 24 1 -0.4849 0.8400 -0.0004 25 1 3.8621 -0.3645 0.0004 26 1 5.7287 -4.5227 0.0014 27 1 9.8459 -0.2248 -0.0058 28 1 12.3304 -0.2561 -0.0158 29 1 13.4943 -2.4512 -0.0021 30 1 12.1665 -4.5246 0.0032 31 1 5.7288 -0.2208 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113762.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:10 Heat of formation + Delta-G solvation = 36.491822 kcal Electronic energy + Delta-G solvation = -18729.194061 eV Core-core repulsion = 15589.270877 eV Total energy + Delta-G solvation = -3139.923183 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.37877 -40.90645 -40.01574 -36.32232 -35.06829 -34.41044 -33.80343 -33.32478 -31.53260 -27.79626 -26.24130 -25.70104 -24.05041 -23.58161 -21.75949 -20.86082 -19.15373 -18.92661 -17.99502 -17.10823 -17.03442 -16.65304 -16.49052 -16.01321 -15.71157 -15.52890 -15.05293 -14.71119 -14.59281 -14.49457 -14.37107 -13.96077 -13.07027 -12.86717 -12.69866 -12.52073 -12.08848 -12.02227 -11.67876 -11.22630 -10.82880 -10.75179 -10.55320 -10.41912 -10.36877 -9.79984 -8.54913 -6.11580 -1.08033 -0.13267 0.23744 0.39936 1.27521 1.34345 1.41954 1.85336 2.15230 2.29319 2.52419 2.54119 2.87339 2.98971 3.13361 3.32820 3.63673 3.68430 3.93229 3.98452 4.05070 4.13263 4.21805 4.52995 4.65713 4.86584 4.99874 5.18400 5.24691 5.37305 5.62302 5.75394 5.81804 6.38803 6.68033 6.71628 7.01593 7.15919 7.69790 8.60588 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034694 B = 0.004047 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.853239 B = 6916.341330 C = 7713.349585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 0.953 3.047 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.227 1.227 7 C -0.330 4.330 8 H 0.067 0.933 9 N -0.556 5.556 10 C 0.487 3.513 11 O -0.617 6.617 12 C -0.213 4.213 13 C 0.192 3.808 14 N -0.498 5.498 15 C 0.348 3.652 16 C 0.133 3.867 17 C -0.123 4.123 18 C -0.079 4.079 19 C -0.139 4.139 20 C 0.083 3.917 21 N -0.482 5.482 22 N -0.500 5.500 23 C 0.176 3.824 24 H 0.286 0.714 25 H 0.390 0.610 26 H 0.183 0.817 27 H 0.155 0.845 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.021 4.526 -0.010 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.206 4.206 3 Si 0.772 3.228 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.150 1.150 7 C -0.459 4.459 8 H 0.085 0.915 9 N -0.194 5.194 10 C 0.275 3.725 11 O -0.504 6.504 12 C -0.221 4.221 13 C 0.024 3.976 14 N -0.211 5.211 15 C 0.083 3.917 16 C -0.003 4.003 17 C -0.145 4.145 18 C -0.105 4.105 19 C -0.159 4.159 20 C -0.076 4.076 21 N -0.192 5.192 22 N -0.213 5.213 23 C 0.007 3.993 24 H 0.096 0.904 25 H 0.227 0.773 26 H 0.200 0.800 27 H 0.172 0.828 28 H 0.195 0.805 29 H 0.198 0.802 30 H 0.202 0.798 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 26.854 3.173 0.000 27.041 hybrid contribution -1.207 1.232 0.005 1.725 sum 25.647 4.405 0.005 26.023 Atomic orbital electron populations 1.69734 1.08197 1.30076 1.46818 1.26182 0.96498 1.02773 0.95144 0.85536 0.79960 0.76678 0.80660 1.17369 1.19173 1.15030 1.19123 0.80677 0.95727 1.50343 0.91513 1.41876 1.06377 1.07096 1.64050 1.17620 0.86177 0.84101 0.84580 1.90645 1.70094 1.32181 1.57487 1.21816 0.95130 0.97683 1.07446 1.23556 0.88467 0.98796 0.86773 1.68601 1.09086 1.29788 1.13621 1.21521 0.94492 0.84167 0.91489 1.18765 0.88258 0.90729 1.02567 1.22363 0.96140 0.98431 0.97558 1.22074 0.92884 1.00593 0.94932 1.22831 1.03646 0.92410 0.97025 1.23397 0.87811 1.01026 0.95406 1.67460 1.11927 1.29150 1.10640 1.68230 1.09579 1.28716 1.14816 1.23729 0.88959 0.98269 0.88331 0.90363 0.77324 0.79995 0.82776 0.80458 0.80240 0.79808 0.78460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.79 13.95 21.69 0.30 -51.49 16 2 C 0.00 -0.20 5.50 84.97 0.47 0.26 16 3 Si 0.95 35.57 27.74 68.60 1.90 37.47 16 4 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.23 -6.97 6.52 99.48 0.65 -6.32 16 7 C -0.33 -18.49 10.16 84.12 0.85 -17.64 16 8 H 0.07 4.45 7.38 -2.91 -0.02 4.43 16 9 N -0.56 -25.64 5.04 -309.84 -1.56 -27.20 16 10 C 0.49 22.65 7.73 86.72 0.67 23.32 16 11 O -0.62 -34.29 16.01 -4.05 -0.06 -34.36 16 12 C -0.21 -7.86 5.91 -19.87 -0.12 -7.98 16 13 C 0.19 6.95 10.87 85.14 0.93 7.88 16 14 N -0.50 -17.70 10.07 -188.05 -1.89 -19.59 16 15 C 0.35 11.27 7.57 137.48 1.04 12.32 16 16 C 0.13 3.64 6.75 41.96 0.28 3.93 16 17 C -0.12 -2.41 9.60 22.59 0.22 -2.19 16 18 C -0.08 -0.94 10.17 22.44 0.23 -0.71 16 19 C -0.14 -1.46 10.11 22.43 0.23 -1.24 16 20 C 0.08 1.40 11.18 84.76 0.95 2.35 16 21 N -0.48 -12.94 10.02 -184.82 -1.85 -14.79 16 22 N -0.50 -14.93 9.39 -188.05 -1.77 -16.70 16 23 C 0.18 5.35 10.81 85.14 0.92 6.27 16 24 H 0.29 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.39 14.61 3.88 -92.71 -0.36 14.25 16 26 H 0.18 6.43 7.74 -2.91 -0.02 6.41 16 27 H 0.15 2.77 7.49 -2.91 -0.02 2.75 16 28 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 29 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 30 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.20 4.75 6.53 -2.91 -0.02 4.73 16 Total: -1.00 -76.58 284.81 2.51 -74.07 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.78 Total: 26.02 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 6.66 Total: 26.57 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -6.77 Total: -129.77 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.06 Total: -34.36 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 1.90 Total: 37.47 kcal Total: -76.58 2.51 -74.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113762.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.566 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds