Wall clock time and date at job start Mon Mar 30 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48496 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47166 * 300.00613 * 3 2 1 6 6 H 1.48498 * 109.47170 * 59.99757 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99864 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.25720 * 312.95526 * 9 7 2 11 11 C 1.53510 * 114.16843 * 180.02562 * 9 7 2 12 12 N 1.47483 * 87.93273 * 220.13871 * 11 9 7 13 13 C 1.46897 * 110.99974 * 138.70396 * 12 11 9 14 14 C 1.50703 * 109.47234 * 170.00363 * 13 12 11 15 15 C 1.38813 * 120.81066 * 89.99461 * 14 13 12 16 16 F 1.35104 * 120.43177 * 359.97438 * 15 14 13 17 17 C 1.38460 * 119.14250 * 180.25549 * 15 14 13 18 18 N 1.31853 * 120.77555 * 359.40591 * 17 15 14 19 19 C 1.31847 * 121.77595 * 0.63868 * 18 17 15 20 20 C 1.38454 * 120.78027 * 359.65164 * 19 18 17 21 21 F 1.35106 * 120.42612 * 180.02562 * 20 19 18 22 22 C 1.47485 * 87.83525 * 27.01157 * 12 11 9 23 23 H 0.97007 * 120.00354 * 359.97438 * 1 2 3 24 24 H 0.96698 * 113.99886 * 47.04604 * 10 9 7 25 25 H 1.09000 * 113.47538 * 105.37947 * 11 9 7 26 26 H 1.08991 * 113.53341 * 334.91356 * 11 9 7 27 27 H 1.08994 * 109.47226 * 49.99932 * 13 12 11 28 28 H 1.09002 * 109.47473 * 289.99768 * 13 12 11 29 29 H 1.07994 * 119.61185 * 179.70711 * 17 15 14 30 30 H 1.08001 * 119.60826 * 179.67419 * 19 18 17 31 31 H 1.08998 * 113.47714 * 87.75544 * 22 12 11 32 32 H 1.09000 * 113.47864 * 218.22484 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.1944 -2.5407 0.9608 11 6 2.1496 -3.7437 -0.0005 12 7 1.2049 -4.3602 -0.9507 13 6 1.9205 -5.0901 -2.0056 14 6 0.9382 -5.9038 -2.8084 15 6 0.3191 -5.3676 -3.9291 16 9 0.5877 -4.1024 -4.3198 17 6 -0.5817 -6.1441 -4.6382 18 7 -0.8443 -7.3816 -4.2667 19 6 -0.2762 -7.9240 -3.2077 20 6 0.6308 -7.2078 -2.4452 21 9 1.2091 -7.7708 -1.3618 22 6 0.8517 -2.9993 -1.3959 23 1 -0.4851 0.8401 0.0004 24 1 -0.3700 -1.7555 0.9590 25 1 2.1888 -4.2510 0.9634 26 1 3.1381 -3.5668 -0.4242 27 1 2.6573 -5.7534 -1.5528 28 1 2.4249 -4.3800 -2.6609 29 1 -1.0713 -5.7329 -5.5085 30 1 -0.5209 -8.9392 -2.9320 31 1 1.4936 -2.6226 -2.1923 32 1 -0.2090 -2.8754 -1.6145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617444726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:59 Heat of formation + Delta-G solvation = -60.483958 kcal Electronic energy + Delta-G solvation = -20739.669951 eV Core-core repulsion = 17144.852396 eV Total energy + Delta-G solvation = -3594.817555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.03994 -49.01632 -40.09520 -39.14192 -34.79184 -32.99339 -32.08269 -30.74491 -28.74993 -26.16598 -25.01444 -23.65869 -23.55880 -21.49436 -18.75516 -18.14298 -18.10648 -17.40574 -16.59567 -16.26596 -15.85281 -15.32862 -15.16316 -14.94938 -14.52676 -14.27721 -14.02367 -13.71799 -13.45601 -13.21116 -12.78131 -12.23155 -12.04414 -11.78583 -11.53124 -11.23268 -10.96655 -10.71131 -10.38714 -10.05070 -9.97165 -9.73342 -9.24864 -9.00645 -8.69524 -8.30588 -8.00504 -6.31667 -4.41702 0.65536 0.79063 3.15980 3.24931 3.28382 3.30439 3.71942 3.98139 4.20549 4.22594 4.37221 4.46859 4.83897 4.95522 5.00398 5.22993 5.50288 5.61762 5.69564 5.74320 5.84363 5.98469 6.19819 6.29383 6.43339 6.60379 6.96472 7.01020 7.27684 7.50361 7.71618 7.79457 7.94057 8.60884 9.28869 9.63130 10.74664 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029650 B = 0.005262 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.109387 B = 5319.498536 C = 5755.763030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.570 6.570 11 C 0.006 3.994 12 N -0.466 5.466 13 C 0.050 3.950 14 C -0.089 4.089 15 C 0.088 3.912 16 F -0.115 7.115 17 C 0.059 3.941 18 N -0.436 5.436 19 C 0.058 3.942 20 C 0.094 3.906 21 F -0.117 7.117 22 C -0.020 4.020 23 H 0.272 0.728 24 H 0.391 0.609 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.063 0.937 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -10.883 -7.753 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.382 6.382 11 C -0.123 4.123 12 N -0.188 5.188 13 C -0.078 4.078 14 C -0.099 4.099 15 C 0.065 3.935 16 F -0.094 7.094 17 C -0.099 4.099 18 N -0.143 5.143 19 C -0.101 4.101 20 C 0.071 3.929 21 F -0.096 7.096 22 C -0.149 4.149 23 H 0.082 0.918 24 H 0.247 0.753 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.191 0.809 30 H 0.190 0.810 31 H 0.081 0.919 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.267 -12.287 -7.858 14.587 hybrid contribution 1.546 2.505 -0.014 2.944 sum 1.813 -9.782 -7.873 12.687 Atomic orbital electron populations 1.69300 1.06164 1.27838 1.50492 1.25071 0.94983 0.99773 0.93270 0.86329 0.80041 0.82557 0.77858 1.19546 1.20706 1.20597 1.21591 0.93715 0.90396 1.51607 0.91411 1.19340 0.85101 0.90617 0.84256 1.86031 1.45247 1.48148 1.58788 1.24094 0.95276 0.96434 0.96481 1.69033 1.26628 1.14244 1.08911 1.21573 0.93617 0.97787 0.94864 1.20529 0.99943 0.94059 0.95375 1.18511 0.98333 0.81385 0.95233 1.91582 1.92249 1.35691 1.89837 1.22923 0.96318 0.90026 1.00665 1.67729 1.22064 1.10943 1.13586 1.22916 0.94214 1.01244 0.91727 1.18405 0.96273 0.91591 0.86587 1.91548 1.82358 1.84223 1.51430 1.24829 1.01077 0.86939 1.02084 0.91794 0.75339 0.90682 0.91506 0.89598 0.91814 0.80936 0.80967 0.91851 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 11.02 55.43 0.61 -23.36 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.10 8.70 -34.44 -0.30 -14.40 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.25 6.28 1.56 -91.24 -0.14 6.13 16 10 O -0.57 -15.51 13.53 -35.23 -0.48 -15.99 16 11 C 0.01 0.12 7.09 -7.54 -0.05 0.07 16 12 N -0.47 -9.72 6.32 -246.06 -1.55 -11.28 16 13 C 0.05 0.85 4.67 -4.98 -0.02 0.83 16 14 C -0.09 -1.39 5.51 -104.20 -0.57 -1.96 16 15 C 0.09 1.29 7.29 -39.29 -0.29 1.00 16 16 F -0.12 -1.83 16.45 2.25 0.04 -1.79 16 17 C 0.06 0.74 11.17 -17.46 -0.20 0.54 16 18 N -0.44 -5.55 10.36 -13.14 -0.14 -5.69 16 19 C 0.06 0.69 11.17 -17.47 -0.20 0.50 16 20 C 0.09 1.32 7.29 -39.29 -0.29 1.03 16 21 F -0.12 -1.70 16.61 2.25 0.04 -1.66 16 22 C -0.02 -0.47 6.97 -7.54 -0.05 -0.52 16 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.39 10.80 6.33 45.56 0.29 11.09 16 25 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 27 H 0.09 1.34 7.67 -51.93 -0.40 0.94 16 28 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 29 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.06 1.44 7.38 -51.93 -0.38 1.05 16 32 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -28.34 286.61 -6.88 -35.22 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.50 Total: 10.10 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.20 Total: -5.02 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -1.08 Total: -40.33 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.48 Total: -15.99 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.07 Total: -3.45 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.34 -6.88 -35.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617444726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.261 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds