Wall clock time and date at job start Mon Mar 30 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47042 * 77.40518 * 3 2 1 5 5 C 1.36939 * 120.00066 * 278.15854 * 4 3 2 6 6 H 1.07998 * 120.00128 * 253.58416 * 5 4 3 7 7 C 1.39001 * 120.00384 * 73.58964 * 5 4 3 8 8 N 1.31393 * 120.00400 * 64.64020 * 7 5 4 9 9 Si 1.86807 * 119.99844 * 244.64671 * 7 5 4 10 10 H 1.48498 * 109.47121 * 89.99707 * 9 7 5 11 11 H 1.48495 * 109.46925 * 209.99601 * 9 7 5 12 12 H 1.48504 * 109.47084 * 329.99388 * 9 7 5 13 13 C 1.34770 * 120.00229 * 98.15570 * 4 3 2 14 14 O 1.21614 * 120.00748 * 185.88176 * 13 4 3 15 15 C 1.47514 * 119.99709 * 5.88110 * 13 4 3 16 16 C 1.38628 * 119.74799 * 329.44196 * 15 13 4 17 17 N 1.33767 * 122.04588 * 179.97438 * 16 15 13 18 18 H 0.97000 * 119.63173 * 180.02562 * 17 16 15 19 19 C 1.37225 * 120.74800 * 0.02562 * 17 16 15 20 20 N 1.32012 * 134.45932 * 180.02562 * 19 17 16 21 21 C 1.33411 * 110.93010 * 179.97438 * 20 19 17 22 22 C 1.35792 * 110.89467 * 0.26454 * 21 20 19 23 23 C 1.41393 * 106.44988 * 359.58744 * 22 21 20 24 24 C 1.38753 * 135.64677 * 180.11425 * 23 22 21 25 25 H 1.09003 * 109.46869 * 317.40730 * 3 2 1 26 26 H 1.08988 * 109.47166 * 197.40625 * 3 2 1 27 27 H 0.96996 * 120.00417 * 180.02562 * 8 7 5 28 28 H 1.07999 * 118.97849 * 0.02562 * 16 15 13 29 29 H 1.08003 * 124.55108 * 179.97438 * 21 20 19 30 30 H 1.07998 * 126.77423 * 179.72515 * 22 21 20 31 31 H 1.08000 * 120.73288 * 0.32704 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3003 -1.3480 5 6 3.1666 -1.5989 -1.7768 6 1 4.1255 -2.0884 -1.8623 7 6 2.0037 -2.2873 -2.1021 8 7 1.2691 -1.8930 -3.1177 9 14 1.4849 -3.7728 -1.0953 10 1 0.6151 -3.3324 0.0248 11 1 0.7366 -4.7200 -1.9601 12 1 2.6907 -4.4470 -0.5503 13 6 3.4768 0.7009 -2.1661 14 8 3.7803 0.4620 -3.3193 15 6 3.5248 2.0867 -1.6628 16 6 2.6470 2.4879 -0.6677 17 7 2.6508 3.7325 -0.1775 18 1 2.0210 3.9754 0.5192 19 6 3.5355 4.6696 -0.6489 20 7 3.7736 5.9381 -0.3718 21 6 4.7650 6.4131 -1.1278 22 6 5.2365 5.4547 -1.9663 23 6 4.4832 4.2872 -1.7039 24 6 4.4598 2.9902 -2.1961 25 1 2.9717 -0.7558 0.6955 26 1 2.9709 0.9813 0.3074 27 1 0.4574 -2.3731 -3.3446 28 1 1.9386 1.7732 -0.2755 29 1 5.1388 7.4254 -1.0825 30 1 6.0317 5.5623 -2.6891 31 1 5.1454 2.6816 -2.9714 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626566734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:34 Heat of formation + Delta-G solvation = 111.458612 kcal Electronic energy + Delta-G solvation = -19801.735350 eV Core-core repulsion = 16665.062971 eV Total energy + Delta-G solvation = -3136.672379 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.62402 -40.75233 -38.86204 -37.96213 -36.23935 -34.91546 -34.30648 -31.01936 -29.96766 -29.05145 -26.98749 -25.16220 -24.13435 -22.49302 -20.87493 -19.64217 -19.03385 -18.68513 -18.31096 -17.61431 -17.08916 -16.70233 -16.41209 -16.00825 -15.59865 -15.29336 -15.15399 -14.58981 -14.10534 -13.96868 -13.76053 -13.63480 -13.46087 -13.30014 -13.24160 -12.81294 -12.51368 -12.35222 -12.04321 -11.74206 -10.79009 -10.55189 -10.35941 -9.52842 -9.16634 -8.80746 -8.58014 -6.13478 -0.84983 0.02584 1.23354 1.27409 1.47026 1.53354 1.55631 1.65156 2.03257 2.27708 2.42337 2.45405 2.57421 2.95631 3.08457 3.21681 3.45467 3.54939 3.90780 4.11626 4.12246 4.19622 4.63770 4.69600 4.85350 4.98096 5.03122 5.31564 5.36698 5.58600 5.81935 6.15204 6.43708 6.46666 6.70157 7.03345 7.16875 7.26299 8.07489 8.24175 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033850 B = 0.005629 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.987121 B = 4972.975731 C = 5504.812250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.201 3.799 3 C 0.160 3.840 4 N -0.444 5.444 5 C -0.458 4.458 6 H 0.073 0.927 7 C 0.105 3.895 8 N -0.775 5.775 9 Si 0.889 3.111 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.241 1.241 13 C 0.530 3.470 14 O -0.577 6.577 15 C -0.228 4.228 16 C 0.172 3.828 17 N -0.469 5.469 18 H 0.444 0.556 19 C 0.230 3.770 20 N -0.555 5.555 21 C 0.038 3.962 22 C -0.232 4.232 23 C -0.189 4.189 24 C 0.080 3.920 25 H 0.156 0.844 26 H 0.152 0.848 27 H 0.273 0.727 28 H 0.205 0.795 29 H 0.183 0.817 30 H 0.155 0.845 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 8.214 9.467 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.118 4.118 3 C 0.034 3.966 4 N -0.166 5.166 5 C -0.579 4.579 6 H 0.090 0.910 7 C -0.118 4.118 8 N -0.399 5.399 9 Si 0.710 3.290 10 H -0.193 1.193 11 H -0.219 1.219 12 H -0.164 1.164 13 C 0.320 3.680 14 O -0.457 6.457 15 C -0.238 4.238 16 C 0.027 3.973 17 N -0.063 5.063 18 H 0.285 0.715 19 C -0.018 4.018 20 N -0.275 5.275 21 C -0.105 4.105 22 C -0.254 4.254 23 C -0.197 4.197 24 C 0.055 3.945 25 H 0.173 0.827 26 H 0.169 0.831 27 H 0.084 0.916 28 H 0.221 0.779 29 H 0.200 0.800 30 H 0.173 0.827 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.458 8.824 9.410 12.982 hybrid contribution 0.012 -1.345 -0.594 1.471 sum 1.470 7.479 8.816 11.653 Atomic orbital electron populations 1.81132 1.14420 1.09456 1.09027 1.30580 0.96593 0.92390 0.92194 1.20524 0.78840 1.07573 0.89623 1.43043 1.58766 1.04730 1.10063 1.18209 0.92938 0.86640 1.60123 0.90950 1.26172 0.95915 0.98757 0.90976 1.70911 1.12586 1.40083 1.16279 0.86649 0.79659 0.81233 0.81498 1.19260 1.21943 1.16418 1.19032 0.79429 0.84015 0.85534 1.90665 1.51978 1.84117 1.18932 1.19687 1.03876 0.96678 1.03511 1.23296 0.97229 0.84667 0.92091 1.40283 1.27883 1.06485 1.31646 0.71491 1.20652 0.93597 0.90969 0.96568 1.69513 1.21146 1.06366 1.30490 1.22744 0.93582 1.00311 0.93840 1.21677 1.05223 0.92256 1.06292 1.20333 1.02189 0.95213 1.01964 1.21435 0.91535 0.89723 0.91781 0.82691 0.83117 0.91608 0.77946 0.79979 0.82741 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.85 18.54 20.01 0.37 -16.48 16 2 C 0.20 6.44 13.00 89.44 1.16 7.60 16 3 C 0.16 4.37 5.39 84.57 0.46 4.83 16 4 N -0.44 -18.00 2.52 -649.06 -1.64 -19.63 16 5 C -0.46 -22.00 8.18 84.08 0.69 -21.31 16 6 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 7 C 0.10 5.08 4.70 84.94 0.40 5.48 16 8 N -0.77 -41.01 13.96 21.67 0.30 -40.71 16 9 Si 0.89 36.08 29.69 68.60 2.04 38.11 16 10 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 13 C 0.53 22.66 7.38 86.69 0.64 23.30 16 14 O -0.58 -30.90 16.70 -4.08 -0.07 -30.96 16 15 C -0.23 -7.37 5.55 -20.18 -0.11 -7.48 16 16 C 0.17 4.14 8.55 84.49 0.72 4.86 16 17 N -0.47 -10.00 5.27 -186.68 -0.98 -10.99 16 18 H 0.44 6.09 8.91 -92.71 -0.83 5.27 16 19 C 0.23 6.62 8.64 135.82 1.17 7.79 16 20 N -0.55 -16.87 11.17 -188.96 -2.11 -18.98 16 21 C 0.04 1.05 11.69 83.89 0.98 2.03 16 22 C -0.23 -6.47 10.99 22.48 0.25 -6.22 16 23 C -0.19 -5.78 6.41 -20.12 -0.13 -5.90 16 24 C 0.08 2.53 9.72 22.95 0.22 2.75 16 25 H 0.16 3.32 8.10 -2.39 -0.02 3.30 16 26 H 0.15 2.82 4.16 -2.39 -0.01 2.81 16 27 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 28 H 0.20 4.44 3.00 -2.91 -0.01 4.43 16 29 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.14 4.55 7.95 -2.91 -0.02 4.53 16 Total: -1.00 -72.59 283.96 4.76 -67.83 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.39 Total: 14.09 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.45 Total: 17.72 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.06 Total: -106.79 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.07 Total: -30.96 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.04 Total: 38.11 kcal Total: -72.59 4.76 -67.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626566734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.294 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds