Wall clock time and date at job start Mon Mar 30 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46983 * 52.55347 * 3 2 1 5 5 C 1.36693 * 119.99700 * 276.38695 * 4 3 2 6 6 H 1.08000 * 119.99962 * 255.07676 * 5 4 3 7 7 C 1.39118 * 120.00023 * 75.08412 * 5 4 3 8 8 N 1.31319 * 120.00376 * 68.09467 * 7 5 4 9 9 Si 1.86800 * 119.99677 * 248.09450 * 7 5 4 10 10 H 1.48497 * 109.47230 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47185 * 119.99860 * 9 7 5 12 12 H 1.48499 * 109.47268 * 239.99854 * 9 7 5 13 13 C 1.34778 * 119.99935 * 96.38534 * 4 3 2 14 14 O 1.21729 * 119.99722 * 183.29286 * 13 4 3 15 15 C 1.46814 * 119.99960 * 3.29857 * 13 4 3 16 16 C 1.37808 * 119.94926 * 334.11530 * 15 13 4 17 17 C 1.39818 * 120.00265 * 179.80098 * 16 15 13 18 18 C 1.36294 * 119.93133 * 0.46251 * 17 16 15 19 19 C 1.40882 * 119.82408 * 359.77897 * 18 17 16 20 20 N 1.32603 * 132.18424 * 180.02562 * 19 18 17 21 21 C 1.33233 * 109.14620 * 179.97438 * 20 19 18 22 22 C 1.35455 * 108.58462 * 359.97438 * 21 20 19 23 23 N 1.36291 * 107.17475 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47112 * 292.55691 * 3 2 1 25 25 H 1.09002 * 109.47228 * 172.55033 * 3 2 1 26 26 H 0.96997 * 120.00211 * 179.97438 * 8 7 5 27 27 H 1.08000 * 119.99145 * 0.02562 * 16 15 13 28 28 H 1.08002 * 120.03628 * 180.26239 * 17 16 15 29 29 H 1.08000 * 120.09195 * 179.75346 * 18 17 16 30 30 H 1.08005 * 125.71080 * 179.97438 * 21 20 19 31 31 H 1.08000 * 126.41378 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8390 -1.0966 5 6 3.2009 -2.1914 -0.9277 6 1 4.1710 -2.6449 -0.7875 7 6 2.0574 -2.9837 -0.9365 8 7 1.3723 -3.1356 -2.0464 9 14 1.4965 -3.8314 0.6308 10 1 2.4336 -3.5017 1.7345 11 1 0.1318 -3.3648 0.9848 12 1 1.4777 -5.3011 0.4191 13 6 3.4434 -0.2779 -2.2720 14 8 3.7923 -0.9808 -3.2025 15 6 3.4004 1.1811 -2.4299 16 6 2.5483 1.9327 -1.6501 17 6 2.5095 3.3227 -1.7967 18 6 3.3082 3.9319 -2.7178 19 6 4.1737 3.1581 -3.5159 20 7 5.0387 3.4848 -4.4664 21 6 5.6237 2.3785 -4.9238 22 6 5.1227 1.3153 -4.2505 23 7 4.2084 1.7963 -3.3615 24 1 2.9715 -0.3934 0.9490 25 1 2.9709 1.0198 -0.1332 26 1 0.5752 -3.6883 -2.0526 27 1 1.9132 1.4483 -0.9232 28 1 1.8450 3.9126 -1.1829 29 1 3.2774 5.0050 -2.8360 30 1 6.3721 2.3365 -5.7014 31 1 5.3965 0.2802 -4.3916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627702306.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:53 Heat of formation + Delta-G solvation = 146.136548 kcal Electronic energy + Delta-G solvation = -20185.034141 eV Core-core repulsion = 17049.865510 eV Total energy + Delta-G solvation = -3135.168631 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.55484 -39.36829 -36.81444 -36.37308 -34.66535 -33.20327 -32.78604 -30.23221 -28.61856 -27.75461 -25.59179 -23.67191 -22.42485 -21.82583 -19.83328 -18.05495 -17.53761 -17.21033 -16.88628 -15.96585 -15.67896 -15.39634 -14.92411 -14.63168 -14.00685 -13.71521 -13.54205 -13.21418 -13.17702 -12.47495 -12.34641 -12.16663 -12.00716 -11.79908 -11.62741 -11.39778 -10.92922 -10.79364 -10.68877 -10.39841 -9.97531 -9.07617 -8.63589 -8.51645 -7.84824 -7.56490 -6.89525 -4.34000 0.62693 1.47759 2.67175 2.85246 3.00186 3.09229 3.12408 3.20394 3.23724 3.55182 3.93004 3.94624 4.19648 4.34586 4.46373 4.55768 4.80825 4.97820 5.04565 5.27452 5.48563 5.62310 5.68523 5.78119 5.91152 5.98831 6.15078 6.22870 6.64397 6.86145 7.09332 7.23627 7.91621 8.07065 8.13146 8.35183 8.80428 8.89749 9.68936 9.93395 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.006761 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.893747 B = 4140.406866 C = 4860.483698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.194 3.806 3 C 0.150 3.850 4 N -0.415 5.415 5 C -0.457 4.457 6 H 0.095 0.905 7 C 0.144 3.856 8 N -0.713 5.713 9 Si 0.818 3.182 10 H -0.250 1.250 11 H -0.274 1.274 12 H -0.275 1.275 13 C 0.516 3.484 14 O -0.515 6.515 15 C 0.065 3.935 16 C -0.149 4.149 17 C -0.108 4.108 18 C -0.071 4.071 19 C 0.203 3.797 20 N -0.495 5.495 21 C 0.015 3.985 22 C -0.062 4.062 23 N -0.335 5.335 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.274 0.726 27 H 0.171 0.829 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.180 0.820 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 9.739 3.093 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.124 4.124 3 C 0.024 3.976 4 N -0.137 5.137 5 C -0.577 4.577 6 H 0.112 0.888 7 C -0.085 4.085 8 N -0.333 5.333 9 Si 0.638 3.362 10 H -0.173 1.173 11 H -0.199 1.199 12 H -0.201 1.201 13 C 0.304 3.696 14 O -0.391 6.391 15 C -0.042 4.042 16 C -0.170 4.170 17 C -0.132 4.132 18 C -0.091 4.091 19 C -0.039 4.039 20 N -0.215 5.215 21 C -0.137 4.137 22 C -0.196 4.196 23 N -0.007 5.007 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.085 0.915 27 H 0.187 0.813 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.197 0.803 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.944 10.018 2.092 10.417 hybrid contribution -0.367 -1.447 0.887 1.737 sum 1.576 8.571 2.979 9.210 Atomic orbital electron populations 1.81093 1.13299 1.08393 1.08360 1.30066 0.96214 0.93005 0.93134 1.20486 0.80409 0.99655 0.97051 1.42624 1.58116 1.06439 1.06562 1.18141 0.93961 0.79304 1.66277 0.88795 1.25566 0.95441 0.93083 0.94390 1.70868 1.12089 1.23607 1.26782 0.87762 0.79693 0.80143 0.88610 1.17345 1.19902 1.20055 1.18648 0.82279 0.83567 0.85122 1.90736 1.48128 1.62404 1.37859 1.21303 0.95051 0.95841 0.92052 1.22329 0.99813 0.94546 1.00352 1.20951 0.99415 0.94058 0.98745 1.20289 0.94408 1.00058 0.94376 1.20993 1.01775 0.80905 1.00253 1.70600 1.10610 1.29112 1.11180 1.22510 1.02016 0.87396 1.01753 1.23058 0.97593 1.02083 0.96868 1.42716 1.25566 1.08692 1.23728 0.86188 0.85879 0.91498 0.81261 0.83765 0.83308 0.80297 0.79346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.78 18.54 42.15 0.78 -8.00 16 2 C 0.19 3.59 13.00 -20.76 -0.27 3.32 16 3 C 0.15 2.47 5.38 -6.83 -0.04 2.43 16 4 N -0.42 -9.05 2.50 -119.39 -0.30 -9.35 16 5 C -0.46 -11.25 8.15 -15.06 -0.12 -11.37 16 6 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.14 3.55 4.83 -17.44 -0.08 3.47 16 8 N -0.71 -18.77 13.95 55.50 0.77 -18.00 16 9 Si 0.82 17.67 29.69 -169.99 -5.05 12.63 16 10 H -0.25 -5.15 7.11 56.52 0.40 -4.75 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.52 11.75 7.39 -12.79 -0.09 11.66 16 14 O -0.51 -13.63 15.15 5.16 0.08 -13.55 16 15 C 0.06 1.23 6.52 -81.87 -0.53 0.70 16 16 C -0.15 -2.30 7.50 -39.15 -0.29 -2.59 16 17 C -0.11 -1.35 10.04 -39.69 -0.40 -1.74 16 18 C -0.07 -0.96 10.09 -39.28 -0.40 -1.35 16 19 C 0.20 3.49 7.80 -156.00 -1.22 2.28 16 20 N -0.49 -8.68 11.31 -12.76 -0.14 -8.82 16 21 C 0.01 0.24 11.83 -17.94 -0.21 0.03 16 22 C -0.06 -1.12 10.84 -16.56 -0.18 -1.30 16 23 N -0.34 -6.30 2.97 -58.75 -0.17 -6.47 16 24 H 0.12 1.67 8.09 -51.93 -0.42 1.25 16 25 H 0.12 1.63 4.28 -51.93 -0.22 1.41 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.17 2.54 2.54 -52.49 -0.13 2.41 16 28 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.18 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.19 3.41 7.03 -52.49 -0.37 3.05 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -32.14 281.28 -5.60 -37.74 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -1.97 Total: 4.07 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -3.84 Total: 5.51 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.94 Total: -50.64 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.05 Total: 12.63 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.14 -5.60 -37.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627702306.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.875 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds