Wall clock time and date at job start Mon Mar 30 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46983 * 52.55347 * 3 2 1 5 5 C 1.36693 * 119.99700 * 276.38695 * 4 3 2 6 6 H 1.08000 * 119.99962 * 255.07676 * 5 4 3 7 7 C 1.39118 * 120.00023 * 75.08412 * 5 4 3 8 8 N 1.31319 * 120.00376 * 68.09467 * 7 5 4 9 9 Si 1.86800 * 119.99677 * 248.09450 * 7 5 4 10 10 H 1.48497 * 109.47230 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47185 * 119.99860 * 9 7 5 12 12 H 1.48499 * 109.47268 * 239.99854 * 9 7 5 13 13 C 1.34778 * 119.99935 * 96.38534 * 4 3 2 14 14 O 1.21729 * 119.99722 * 183.29286 * 13 4 3 15 15 C 1.46814 * 119.99960 * 3.29857 * 13 4 3 16 16 C 1.37808 * 119.94926 * 334.11530 * 15 13 4 17 17 C 1.39818 * 120.00265 * 179.80098 * 16 15 13 18 18 C 1.36294 * 119.93133 * 0.46251 * 17 16 15 19 19 C 1.40882 * 119.82408 * 359.77897 * 18 17 16 20 20 N 1.32603 * 132.18424 * 180.02562 * 19 18 17 21 21 C 1.33233 * 109.14620 * 179.97438 * 20 19 18 22 22 C 1.35455 * 108.58462 * 359.97438 * 21 20 19 23 23 N 1.36291 * 107.17475 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47112 * 292.55691 * 3 2 1 25 25 H 1.09002 * 109.47228 * 172.55033 * 3 2 1 26 26 H 0.96997 * 120.00211 * 179.97438 * 8 7 5 27 27 H 1.08000 * 119.99145 * 0.02562 * 16 15 13 28 28 H 1.08002 * 120.03628 * 180.26239 * 17 16 15 29 29 H 1.08000 * 120.09195 * 179.75346 * 18 17 16 30 30 H 1.08005 * 125.71080 * 179.97438 * 21 20 19 31 31 H 1.08000 * 126.41378 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8390 -1.0966 5 6 3.2009 -2.1914 -0.9277 6 1 4.1710 -2.6449 -0.7875 7 6 2.0574 -2.9837 -0.9365 8 7 1.3723 -3.1356 -2.0464 9 14 1.4965 -3.8314 0.6308 10 1 2.4336 -3.5017 1.7345 11 1 0.1318 -3.3648 0.9848 12 1 1.4777 -5.3011 0.4191 13 6 3.4434 -0.2779 -2.2720 14 8 3.7923 -0.9808 -3.2025 15 6 3.4004 1.1811 -2.4299 16 6 2.5483 1.9327 -1.6501 17 6 2.5095 3.3227 -1.7967 18 6 3.3082 3.9319 -2.7178 19 6 4.1737 3.1581 -3.5159 20 7 5.0387 3.4848 -4.4664 21 6 5.6237 2.3785 -4.9238 22 6 5.1227 1.3153 -4.2505 23 7 4.2084 1.7963 -3.3615 24 1 2.9715 -0.3934 0.9490 25 1 2.9709 1.0198 -0.1332 26 1 0.5752 -3.6883 -2.0526 27 1 1.9132 1.4483 -0.9232 28 1 1.8450 3.9126 -1.1829 29 1 3.2774 5.0050 -2.8360 30 1 6.3721 2.3365 -5.7014 31 1 5.3965 0.2802 -4.3916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627702306.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:53 Heat of formation + Delta-G solvation = 125.727817 kcal Electronic energy + Delta-G solvation = -20185.919130 eV Core-core repulsion = 17049.865510 eV Total energy + Delta-G solvation = -3136.053620 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.84645 -40.93519 -38.29362 -37.80753 -36.34904 -34.63700 -34.43657 -31.60917 -29.90923 -29.25235 -27.25502 -25.08483 -23.71113 -23.17266 -21.38675 -19.73874 -18.82370 -18.76136 -18.28729 -17.35831 -17.01115 -16.75678 -16.70501 -16.09362 -15.52443 -15.34870 -14.98215 -14.65796 -14.41614 -14.16662 -13.97451 -13.61090 -13.55403 -13.21691 -13.03875 -12.79858 -12.60891 -12.19359 -12.08169 -11.84657 -11.31920 -10.86900 -10.45505 -9.84791 -9.65460 -8.90196 -8.68476 -6.22808 -0.64912 0.26472 1.15466 1.33740 1.43966 1.48749 1.53945 1.64325 1.74744 2.15274 2.21512 2.35775 2.54391 2.80632 3.11992 3.28012 3.57038 3.66223 3.83110 4.08368 4.21419 4.44958 4.46238 4.49465 4.66647 4.91416 5.01493 5.07307 5.23650 5.45718 5.63139 5.93318 6.34609 6.44671 6.56652 6.77823 7.02917 7.07675 7.92374 8.10023 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.006761 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.893747 B = 4140.406866 C = 4860.483698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.208 3.792 3 C 0.153 3.847 4 N -0.424 5.424 5 C -0.478 4.478 6 H 0.073 0.927 7 C 0.114 3.886 8 N -0.765 5.765 9 Si 0.885 3.115 10 H -0.226 1.226 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.573 6.573 15 C 0.022 3.978 16 C -0.121 4.121 17 C -0.095 4.095 18 C -0.059 4.059 19 C 0.188 3.812 20 N -0.512 5.512 21 C 0.028 3.972 22 C -0.099 4.099 23 N -0.344 5.344 24 H 0.154 0.846 25 H 0.162 0.838 26 H 0.277 0.723 27 H 0.176 0.824 28 H 0.198 0.802 29 H 0.189 0.811 30 H 0.213 0.787 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 12.482 5.265 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.110 4.110 3 C 0.028 3.972 4 N -0.145 5.145 5 C -0.599 4.599 6 H 0.091 0.909 7 C -0.111 4.111 8 N -0.388 5.388 9 Si 0.705 3.295 10 H -0.148 1.148 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.294 3.706 14 O -0.454 6.454 15 C -0.085 4.085 16 C -0.143 4.143 17 C -0.118 4.118 18 C -0.079 4.079 19 C -0.054 4.054 20 N -0.233 5.233 21 C -0.123 4.123 22 C -0.233 4.233 23 N -0.016 5.016 24 H 0.171 0.829 25 H 0.179 0.821 26 H 0.089 0.911 27 H 0.193 0.807 28 H 0.215 0.785 29 H 0.206 0.794 30 H 0.230 0.770 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.293 12.760 4.317 13.533 hybrid contribution -0.152 -2.196 0.148 2.206 sum 1.141 10.564 4.465 11.525 Atomic orbital electron populations 1.81113 1.14281 1.09462 1.09315 1.30319 0.96392 0.92070 0.92182 1.20781 0.79141 1.00897 0.96344 1.42889 1.57865 1.06273 1.07523 1.18134 0.93383 0.81237 1.67102 0.90924 1.26314 0.95294 0.93322 0.96212 1.70906 1.13372 1.25839 1.28658 0.86735 0.78952 0.78793 0.85053 1.14818 1.20756 1.20192 1.19263 0.81028 0.85400 0.84903 1.90682 1.50593 1.64356 1.39792 1.20873 0.98413 0.94115 0.95111 1.22567 0.97291 0.96047 0.98389 1.21469 0.99258 0.92524 0.98513 1.20906 0.92460 1.01717 0.92782 1.21787 1.02306 0.80593 1.00667 1.70634 1.11389 1.29359 1.11873 1.23005 1.01617 0.86311 1.01402 1.23061 0.99396 1.02125 0.98685 1.42780 1.25668 1.09401 1.23741 0.82879 0.82120 0.91147 0.80704 0.78466 0.79414 0.77041 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.91 18.54 20.00 0.37 -17.54 16 2 C 0.21 7.24 13.00 89.44 1.16 8.40 16 3 C 0.15 4.70 5.38 84.57 0.45 5.15 16 4 N -0.42 -18.62 2.50 -649.85 -1.62 -20.25 16 5 C -0.48 -24.07 8.15 84.15 0.69 -23.39 16 6 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 7 C 0.11 5.71 4.83 84.98 0.41 6.13 16 8 N -0.77 -41.61 13.95 21.69 0.30 -41.31 16 9 Si 0.89 36.47 29.69 68.60 2.04 38.51 16 10 H -0.23 -8.42 7.11 99.48 0.71 -7.71 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.50 23.74 7.39 86.49 0.64 24.38 16 14 O -0.57 -32.49 15.15 -4.44 -0.07 -32.55 16 15 C 0.02 0.82 6.52 40.35 0.26 1.08 16 16 C -0.12 -3.38 7.50 22.55 0.17 -3.21 16 17 C -0.09 -1.86 10.04 22.20 0.22 -1.63 16 18 C -0.06 -1.32 10.09 22.46 0.23 -1.10 16 19 C 0.19 6.11 7.80 134.07 1.05 7.16 16 20 N -0.51 -17.21 11.31 -194.28 -2.20 -19.40 16 21 C 0.03 0.90 11.83 83.84 0.99 1.90 16 22 C -0.10 -3.74 10.84 83.36 0.90 -2.83 16 23 N -0.34 -12.95 2.97 -339.78 -1.01 -13.96 16 24 H 0.15 3.74 8.09 -2.39 -0.02 3.72 16 25 H 0.16 3.70 4.28 -2.39 -0.01 3.69 16 26 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.18 4.66 2.54 -2.91 -0.01 4.65 16 28 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.21 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.17 6.85 7.03 -2.91 -0.02 6.83 16 Total: -1.00 -74.84 281.28 6.19 -68.65 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.20 Total: 15.82 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.18 Total: 22.03 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.16 Total: -112.46 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.07 Total: -32.55 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.04 Total: 38.51 kcal Total: -74.84 6.19 -68.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627702306.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.383 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds