Wall clock time and date at job start Mon Mar 30 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47063 * 2 1 4 4 S 1.81398 * 109.47269 * 120.00009 * 2 1 3 5 5 C 1.81399 * 103.00088 * 294.99980 * 4 2 1 6 6 C 1.52999 * 109.46810 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.47362 * 60.00691 * 6 5 4 8 8 O 1.42900 * 109.47616 * 299.99957 * 6 5 4 9 9 C 1.50706 * 109.46953 * 180.02562 * 6 5 4 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.46819 * 59.99744 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47196 * 300.00241 * 13 11 9 17 17 C 1.50703 * 109.46959 * 240.00001 * 2 1 3 18 18 C 1.38224 * 120.01089 * 94.72532 * 17 2 1 19 19 C 1.38224 * 120.02279 * 179.72065 * 18 17 2 20 20 C 1.38266 * 120.05146 * 0.55094 * 19 18 17 21 21 C 1.38173 * 120.02529 * 359.72372 * 20 19 18 22 22 C 1.38431 * 120.01291 * 274.99843 * 17 2 1 23 23 F 1.35093 * 120.02779 * 0.02562 * 22 17 2 24 24 H 1.09001 * 109.46854 * 299.99441 * 1 2 3 25 25 H 1.09000 * 109.47435 * 59.99789 * 1 2 3 26 26 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00061 * 5 4 2 28 28 H 1.09001 * 109.46593 * 60.00058 * 5 4 2 29 29 H 0.96700 * 113.99696 * 300.00309 * 8 6 5 30 30 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 31 31 H 1.08003 * 119.98456 * 0.02562 * 18 17 2 32 32 H 1.08002 * 119.97103 * 180.27781 * 19 18 17 33 33 H 1.08002 * 119.98505 * 179.74798 * 20 19 18 34 34 H 1.07998 * 120.01318 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5665 0.2153 2.8309 6 6 2.0041 -0.3786 4.1713 7 1 3.0913 -0.4517 4.1988 8 8 1.4351 -1.6805 4.3241 9 6 1.5315 0.5104 5.2928 10 1 0.9744 1.4087 5.0715 11 6 1.8103 0.1768 6.6012 12 7 2.4882 -0.9175 6.8706 13 14 1.2251 1.2790 7.9912 14 1 -0.2561 1.3783 7.9540 15 1 1.6497 0.7026 9.2922 16 1 1.8160 2.6320 7.8322 17 6 2.0323 -0.7104 -1.2305 18 6 2.3557 0.0131 -2.3630 19 6 2.8219 -0.6376 -3.4898 20 6 2.9545 -2.0139 -3.4894 21 6 2.6265 -2.7398 -2.3604 22 6 2.1646 -2.0884 -1.2289 23 9 1.8431 -2.7972 -0.1247 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 2.0002 1.2085 2.7141 28 1 0.4792 0.2880 2.8037 29 1 0.4682 -1.6913 4.3092 30 1 2.6841 -1.1525 7.7911 31 1 2.2487 1.0879 -2.3656 32 1 3.0786 -0.0710 -4.3727 33 1 3.3150 -2.5217 -4.3718 34 1 2.7305 -3.8148 -2.3602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652627010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:23 Heat of formation + Delta-G solvation = -74.592069 kcal Electronic energy + Delta-G solvation = -18033.977039 eV Core-core repulsion = 14972.468135 eV Total energy + Delta-G solvation = -3061.508904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.65956 -39.17283 -35.78426 -34.31396 -32.13075 -30.67952 -29.88613 -29.16139 -25.27218 -24.17244 -22.82786 -21.54583 -20.69519 -17.52674 -17.12172 -16.73418 -16.14850 -15.44180 -15.02259 -14.62863 -14.36018 -14.23734 -14.12940 -13.81961 -13.49765 -13.31043 -13.01590 -12.64937 -12.29590 -12.07295 -11.71958 -11.42885 -11.35974 -11.09057 -10.94521 -10.83345 -10.60974 -10.02573 -9.34555 -9.09896 -8.95057 -8.61110 -8.58100 -8.18892 -6.92477 -6.02582 -4.22852 1.02967 1.11128 2.21923 3.27297 3.27807 3.33528 3.35703 3.50525 4.31328 4.37539 4.44569 4.69783 4.80295 5.06269 5.13316 5.24106 5.26687 5.28788 5.61339 5.73499 5.80017 5.91788 5.98382 6.07123 6.08745 6.16281 6.22966 6.26969 6.39662 6.73413 6.81418 7.66373 7.79951 8.10383 8.78670 9.38781 9.55503 11.01228 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044364 B = 0.004142 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.993331 B = 6758.949970 C = 7068.434393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 H 0.092 0.908 4 S -0.217 6.217 5 C -0.114 4.114 6 C 0.248 3.752 7 H 0.062 0.938 8 O -0.554 6.554 9 C -0.572 4.572 10 H 0.056 0.944 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.276 1.276 17 C -0.095 4.095 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.096 4.096 21 C -0.158 4.158 22 C 0.116 3.884 23 F -0.108 7.108 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.345 0.655 30 H 0.262 0.738 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 0.845 -20.222 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 H 0.110 0.890 4 S 0.012 5.988 5 C -0.262 4.262 6 C 0.189 3.811 7 H 0.080 0.920 8 O -0.356 6.356 9 C -0.612 4.612 10 H 0.074 0.926 11 C -0.126 4.126 12 N -0.491 5.491 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.153 4.153 20 C -0.114 4.114 21 C -0.177 4.177 22 C 0.096 3.904 23 F -0.086 7.086 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.188 0.812 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.407 -0.430 -19.926 19.935 hybrid contribution -1.555 1.979 0.905 2.675 sum -1.962 1.549 -19.021 19.185 Atomic orbital electron populations 1.22022 0.92471 1.03246 1.02028 1.22019 0.98945 1.01492 0.94345 0.88994 1.87635 1.75785 1.36899 0.98458 1.24690 1.02755 1.00422 0.98363 1.19097 0.95032 0.81471 0.85508 0.91988 1.86608 1.22155 1.31008 1.95869 1.21526 1.38761 1.09554 0.91313 0.92582 1.25036 0.94082 0.94712 0.98781 1.70074 1.36758 1.22774 1.19490 0.86675 0.79259 0.80805 0.81272 1.20098 1.21092 1.20122 1.19499 1.02458 0.92099 0.95675 1.20875 0.97762 1.00009 0.91713 1.21117 1.01118 0.94619 0.98457 1.20985 0.98776 0.94077 0.97546 1.21196 1.02711 1.01076 0.92696 1.17668 0.99333 0.89260 0.84130 1.91620 1.89659 1.77542 1.49815 0.91644 0.92362 0.91380 0.91194 0.91293 0.81165 0.92767 0.85203 0.85453 0.85255 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.08 37.16 0.34 -1.50 16 2 C -0.04 -0.58 2.97 -27.88 -0.08 -0.66 16 3 H 0.09 1.26 8.05 -51.92 -0.42 0.84 16 4 S -0.22 -4.23 17.75 -107.50 -1.91 -6.14 16 5 C -0.11 -2.40 5.27 37.16 0.20 -2.20 16 6 C 0.25 6.45 2.88 -27.88 -0.08 6.37 16 7 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 8 O -0.55 -14.80 12.33 -35.23 -0.43 -15.24 16 9 C -0.57 -15.76 8.76 -34.44 -0.30 -16.06 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 12 N -0.86 -25.58 12.84 55.43 0.71 -24.86 16 13 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.10 -1.29 4.90 -104.55 -0.51 -1.81 16 18 C -0.08 -0.90 9.68 -39.59 -0.38 -1.28 16 19 C -0.13 -1.22 10.04 -39.58 -0.40 -1.62 16 20 C -0.10 -0.88 10.04 -39.59 -0.40 -1.28 16 21 C -0.16 -1.81 10.03 -39.51 -0.40 -2.21 16 22 C 0.12 1.68 6.96 -39.42 -0.27 1.40 16 23 F -0.11 -1.87 14.19 2.25 0.03 -1.84 16 24 H 0.06 0.89 6.92 -51.93 -0.36 0.53 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 28 H 0.07 1.38 7.14 -51.92 -0.37 1.00 16 29 H 0.34 8.22 9.04 45.56 0.41 8.63 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -31.65 305.98 -8.06 -39.70 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.66 Total: 6.32 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.39 Total: -18.67 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.71 Total: -24.86 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.43 Total: -15.24 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.03 Total: -1.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -1.91 Total: -6.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.65 -8.06 -39.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652627010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.887 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds