Wall clock time and date at job start Mon Mar 30 2020 01:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47063 * 2 1 4 4 S 1.81398 * 109.47269 * 120.00009 * 2 1 3 5 5 C 1.81399 * 103.00088 * 294.99980 * 4 2 1 6 6 C 1.52999 * 109.46810 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.47362 * 60.00691 * 6 5 4 8 8 O 1.42900 * 109.47616 * 299.99957 * 6 5 4 9 9 C 1.50706 * 109.46953 * 180.02562 * 6 5 4 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.46819 * 59.99744 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47196 * 300.00241 * 13 11 9 17 17 C 1.50703 * 109.46959 * 240.00001 * 2 1 3 18 18 C 1.38224 * 120.01089 * 94.72532 * 17 2 1 19 19 C 1.38224 * 120.02279 * 179.72065 * 18 17 2 20 20 C 1.38266 * 120.05146 * 0.55094 * 19 18 17 21 21 C 1.38173 * 120.02529 * 359.72372 * 20 19 18 22 22 C 1.38431 * 120.01291 * 274.99843 * 17 2 1 23 23 F 1.35093 * 120.02779 * 0.02562 * 22 17 2 24 24 H 1.09001 * 109.46854 * 299.99441 * 1 2 3 25 25 H 1.09000 * 109.47435 * 59.99789 * 1 2 3 26 26 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00061 * 5 4 2 28 28 H 1.09001 * 109.46593 * 60.00058 * 5 4 2 29 29 H 0.96700 * 113.99696 * 300.00309 * 8 6 5 30 30 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 31 31 H 1.08003 * 119.98456 * 0.02562 * 18 17 2 32 32 H 1.08002 * 119.97103 * 180.27781 * 19 18 17 33 33 H 1.08002 * 119.98505 * 179.74798 * 20 19 18 34 34 H 1.07998 * 120.01318 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5665 0.2153 2.8309 6 6 2.0041 -0.3786 4.1713 7 1 3.0913 -0.4517 4.1988 8 8 1.4351 -1.6805 4.3241 9 6 1.5315 0.5104 5.2928 10 1 0.9744 1.4087 5.0715 11 6 1.8103 0.1768 6.6012 12 7 2.4882 -0.9175 6.8706 13 14 1.2251 1.2790 7.9912 14 1 -0.2561 1.3783 7.9540 15 1 1.6497 0.7026 9.2922 16 1 1.8160 2.6320 7.8322 17 6 2.0323 -0.7104 -1.2305 18 6 2.3557 0.0131 -2.3630 19 6 2.8219 -0.6376 -3.4898 20 6 2.9545 -2.0139 -3.4894 21 6 2.6265 -2.7398 -2.3604 22 6 2.1646 -2.0884 -1.2289 23 9 1.8431 -2.7972 -0.1247 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 2.0002 1.2085 2.7141 28 1 0.4792 0.2880 2.8037 29 1 0.4682 -1.6913 4.3092 30 1 2.6841 -1.1525 7.7911 31 1 2.2487 1.0879 -2.3656 32 1 3.0786 -0.0710 -4.3727 33 1 3.3150 -2.5217 -4.3718 34 1 2.7305 -3.8148 -2.3602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652627010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:22 Heat of formation + Delta-G solvation = -94.486590 kcal Electronic energy + Delta-G solvation = -18034.839730 eV Core-core repulsion = 14972.468135 eV Total energy + Delta-G solvation = -3062.371595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79705 -40.02734 -37.85641 -35.31846 -34.29477 -31.66590 -31.46178 -30.31549 -27.32815 -25.16130 -23.70130 -23.18673 -22.03674 -19.24126 -18.49723 -17.80220 -17.22479 -16.71398 -16.58429 -16.32925 -16.11214 -15.89629 -15.27065 -15.09908 -14.84030 -14.36602 -14.19250 -14.07800 -13.52191 -13.30466 -13.10854 -12.95025 -12.81676 -12.73057 -12.57939 -12.28543 -11.99683 -11.72710 -11.27483 -10.75364 -10.50433 -10.26291 -9.90615 -9.55102 -8.47213 -8.16323 -6.45119 0.12543 0.26972 0.86951 1.40443 1.42756 1.51229 1.79283 2.38430 2.67543 3.09224 3.39430 3.46025 3.82537 3.98837 4.13884 4.14958 4.21791 4.24355 4.40035 4.42226 4.44201 4.66164 4.74921 4.90588 4.95377 5.11459 5.17442 5.25379 5.38898 5.47402 5.52860 5.64524 5.97635 5.97994 6.64979 7.28159 7.48577 8.88080 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044364 B = 0.004142 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.993331 B = 6758.949970 C = 7068.434393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 H 0.106 0.894 4 S -0.267 6.267 5 C -0.097 4.097 6 C 0.248 3.752 7 H 0.019 0.981 8 O -0.571 6.571 9 C -0.586 4.586 10 H 0.066 0.934 11 C 0.025 3.975 12 N -0.901 5.901 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.266 1.266 17 C -0.116 4.116 18 C -0.084 4.084 19 C -0.124 4.124 20 C -0.088 4.088 21 C -0.166 4.166 22 C 0.075 3.925 23 F -0.137 7.137 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.355 0.645 30 H 0.263 0.737 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 2.712 -22.722 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 H 0.124 0.876 4 S -0.037 6.037 5 C -0.245 4.245 6 C 0.189 3.811 7 H 0.037 0.963 8 O -0.375 6.375 9 C -0.625 4.625 10 H 0.084 0.916 11 C -0.178 4.178 12 N -0.537 5.537 13 Si 0.791 3.209 14 H -0.189 1.189 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.118 4.118 18 C -0.103 4.103 19 C -0.142 4.142 20 C -0.105 4.105 21 C -0.184 4.184 22 C 0.055 3.945 23 F -0.116 7.116 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.200 0.800 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.996 1.451 -22.433 22.502 hybrid contribution -1.325 1.361 1.456 2.393 sum -2.321 2.811 -20.977 21.291 Atomic orbital electron populations 1.21976 0.91423 1.02692 1.03181 1.22064 0.99716 1.01378 0.91777 0.87560 1.87824 1.76698 1.38076 1.01147 1.24235 1.03177 1.00295 0.96786 1.18872 0.92704 0.81269 0.88260 0.96312 1.86549 1.23079 1.31680 1.96200 1.21933 1.38488 1.09930 0.92161 0.91611 1.25987 0.94007 0.96080 1.01729 1.70235 1.38434 1.24993 1.20044 0.85493 0.79130 0.78804 0.77435 1.18928 1.21003 1.19065 1.19556 1.04273 0.91897 0.96117 1.21207 0.96857 1.01186 0.91051 1.21598 0.98896 0.94739 0.98940 1.21447 0.97033 0.94478 0.97586 1.21447 1.02471 1.01903 0.92609 1.18153 1.01910 0.90018 0.84447 1.91532 1.90369 1.78192 1.51497 0.92213 0.89251 0.92825 0.90627 0.90252 0.80032 0.92820 0.82776 0.81705 0.81789 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.08 71.98 0.65 -2.75 16 2 C -0.02 -0.60 2.97 29.85 0.09 -0.51 16 3 H 0.11 2.71 8.05 -2.39 -0.02 2.69 16 4 S -0.27 -10.72 17.75 -56.49 -1.00 -11.72 16 5 C -0.10 -4.15 5.27 71.98 0.38 -3.77 16 6 C 0.25 13.39 2.88 29.85 0.09 13.47 16 7 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 8 O -0.57 -31.85 12.33 -148.98 -1.84 -33.69 16 9 C -0.59 -32.75 8.76 25.60 0.22 -32.53 16 10 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 11 C 0.02 1.41 5.40 84.65 0.46 1.87 16 12 N -0.90 -55.36 12.84 21.45 0.28 -55.09 16 13 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 C -0.12 -3.01 4.90 -19.82 -0.10 -3.11 16 18 C -0.08 -1.50 9.68 22.26 0.22 -1.29 16 19 C -0.12 -1.70 10.04 22.27 0.22 -1.47 16 20 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 21 C -0.17 -3.59 10.03 22.31 0.22 -3.36 16 22 C 0.07 2.16 6.96 22.37 0.16 2.31 16 23 F -0.14 -5.01 14.19 44.97 0.64 -4.37 16 24 H 0.06 1.56 6.92 -2.39 -0.02 1.55 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.08 3.19 7.14 -2.39 -0.02 3.17 16 29 H 0.35 17.58 9.04 -74.06 -0.67 16.91 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -71.65 305.98 3.37 -68.29 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.43 Total: 23.20 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 2.83 Total: -32.22 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.84 Total: -33.69 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.64 Total: -4.37 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.00 Total: -11.72 kcal Total: -71.65 3.37 -68.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652627010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.201 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds