Wall clock time and date at job start Mon Mar 30 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47445 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46662 * 294.99753 * 11 10 9 13 13 C 1.52999 * 109.47140 * 174.99951 * 11 10 9 14 14 N 1.46503 * 109.47146 * 54.99850 * 11 10 9 15 15 C 1.36930 * 119.99876 * 204.99944 * 14 11 10 16 16 H 1.08002 * 119.99904 * 0.02562 * 15 14 11 17 17 C 1.38809 * 120.00064 * 179.97438 * 15 14 11 18 18 N 1.31623 * 119.99784 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47077 * 90.00813 * 19 17 15 21 21 H 1.48504 * 109.47378 * 210.00662 * 19 17 15 22 22 H 1.48498 * 109.47479 * 330.00477 * 19 17 15 23 23 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 24 24 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 25 25 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 26 26 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 27 27 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 28 28 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 29 29 H 1.09003 * 109.46714 * 299.99738 * 13 11 10 30 30 H 1.08999 * 109.47109 * 59.99643 * 13 11 10 31 31 H 1.08994 * 109.47071 * 180.02562 * 13 11 10 32 32 H 0.97001 * 119.99717 * 24.99756 * 14 11 10 33 33 H 0.97002 * 119.99370 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5336 -5.8594 -0.0007 12 1 4.0850 -5.7301 -0.9321 13 6 3.0776 -7.3145 0.1243 14 7 4.4000 -5.5202 1.1309 15 6 5.7381 -5.8065 1.0786 16 1 6.1547 -6.2820 0.2030 17 6 6.5591 -5.4847 2.1505 18 7 6.0514 -4.9047 3.2175 19 14 8.3846 -5.8746 2.0789 20 1 9.1145 -4.7212 1.4942 21 1 8.8893 -6.1357 3.4509 22 1 8.6012 -7.0770 1.2347 23 1 -0.3633 0.0008 1.0276 24 1 -0.3633 0.8895 -0.5146 25 1 -0.3633 -0.8904 -0.5131 26 1 3.6973 -3.3319 0.0002 27 1 1.7112 -5.1325 0.8894 28 1 1.7118 -5.1319 -0.8905 29 1 2.5262 -7.4436 1.0557 30 1 2.4329 -7.5668 -0.7176 31 1 3.9488 -7.9695 0.1245 32 1 4.0259 -5.0928 1.9172 33 1 6.6252 -4.6802 3.9667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662162933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:30 Heat of formation + Delta-G solvation = 39.916430 kcal Electronic energy + Delta-G solvation = -18216.387735 eV Core-core repulsion = 15212.057005 eV Total energy + Delta-G solvation = -3004.330730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94687 -39.37663 -36.46818 -33.76176 -33.27954 -31.99585 -29.12229 -28.46928 -26.98395 -25.75977 -23.77978 -22.23888 -20.46141 -19.95524 -18.47478 -17.69796 -17.04214 -16.11144 -15.80196 -15.27030 -14.67026 -14.37391 -13.99632 -13.84741 -13.22060 -13.08626 -13.05416 -12.49307 -12.34533 -12.19653 -12.11578 -11.55340 -11.43892 -10.93405 -10.84297 -10.44743 -10.31983 -10.11574 -9.95357 -9.82994 -9.80266 -9.73659 -9.07429 -8.88064 -7.14007 -5.89566 -3.20665 -0.25564 0.84442 1.48763 1.92258 3.04215 3.18205 3.35210 3.41604 3.43081 3.87162 4.47505 4.55013 4.82502 5.24829 5.32761 5.37877 5.47035 5.51377 5.63508 5.81251 5.96110 6.04042 6.08218 6.18428 6.45580 6.55899 6.67877 6.92751 7.53743 7.58712 7.66918 8.17922 8.27657 9.39770 9.92899 10.28473 11.32166 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.005673 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.009970 B = 4934.202124 C = 6104.830587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.095 3.905 3 N -0.257 5.257 4 N -0.264 5.264 5 S 0.444 5.556 6 C -0.292 4.292 7 C 0.599 3.401 8 O -0.528 6.528 9 N -0.701 5.701 10 C 0.115 3.885 11 C 0.158 3.842 12 H 0.055 0.945 13 C -0.162 4.162 14 N -0.725 5.725 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.282 1.282 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.410 0.590 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.385 0.615 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 5.668 -7.856 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 N -0.123 5.123 4 N -0.245 5.245 5 S 0.580 5.420 6 C -0.433 4.433 7 C 0.382 3.618 8 O -0.407 6.407 9 N -0.353 5.353 10 C -0.009 4.009 11 C 0.048 3.952 12 H 0.073 0.927 13 C -0.223 4.223 14 N -0.367 5.367 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.736 3.264 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.247 0.753 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.219 0.781 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.919 6.539 -7.888 12.363 hybrid contribution 0.232 -0.617 0.472 0.811 sum -6.687 5.922 -7.415 11.609 Atomic orbital electron populations 1.20490 0.83951 1.04722 1.04266 1.22922 1.00131 0.85139 0.97104 1.70620 0.97051 1.28064 1.16537 1.78771 1.09394 1.16510 1.19794 1.82990 1.09221 1.00406 1.49392 1.27842 0.98327 1.00227 1.16888 1.16432 0.85998 0.81991 0.77412 1.90772 1.15850 1.83197 1.50851 1.45898 1.10111 1.06367 1.72901 1.21828 0.97977 0.79058 1.02049 1.20537 0.89665 0.91846 0.93178 0.92666 1.22354 1.00908 0.98815 1.00203 1.42491 1.05194 1.72532 1.16530 1.19211 0.84005 1.33470 1.00995 0.91012 1.24743 0.98115 1.01220 0.96399 1.69661 1.34746 1.46802 1.06491 0.86226 0.85371 0.77969 0.76798 1.21600 1.21787 1.20739 0.89470 0.90143 0.88107 0.75334 0.91183 0.91177 0.93121 0.94098 0.92188 0.78088 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 9.90 36.01 0.36 -0.46 16 2 C 0.09 1.31 7.00 -82.84 -0.58 0.73 16 3 N -0.26 -3.84 11.54 33.42 0.39 -3.45 16 4 N -0.26 -3.93 12.51 60.35 0.75 -3.17 16 5 S 0.44 5.93 23.05 -107.50 -2.48 3.45 16 6 C -0.29 -4.20 6.81 -35.95 -0.24 -4.45 16 7 C 0.60 9.36 7.80 -12.64 -0.10 9.26 16 8 O -0.53 -9.08 14.89 5.25 0.08 -9.00 16 9 N -0.70 -10.88 5.38 -61.46 -0.33 -11.21 16 10 C 0.11 1.77 5.23 -4.04 -0.02 1.75 16 11 C 0.16 2.73 3.05 -67.93 -0.21 2.52 16 12 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 13 C -0.16 -2.59 9.49 37.16 0.35 -2.24 16 14 N -0.72 -16.00 4.56 -53.42 -0.24 -16.25 16 15 C -0.25 -6.15 9.93 -15.06 -0.15 -6.30 16 16 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.17 13.06 55.49 0.72 -25.44 16 19 Si 0.91 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.10 1.17 6.47 -51.93 -0.34 0.84 16 26 H 0.41 6.47 7.57 -40.82 -0.31 6.16 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -28.95 303.62 -6.13 -35.08 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -3.89 Total: 8.93 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.69 Total: 0.51 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 1.29 Total: -59.53 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -2.48 Total: 3.45 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.95 -6.13 -35.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662162933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.001 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds