Wall clock time and date at job start Mon Mar 30 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47445 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46662 * 294.99753 * 11 10 9 13 13 C 1.52999 * 109.47140 * 174.99951 * 11 10 9 14 14 N 1.46503 * 109.47146 * 54.99850 * 11 10 9 15 15 C 1.36930 * 119.99876 * 204.99944 * 14 11 10 16 16 H 1.08002 * 119.99904 * 0.02562 * 15 14 11 17 17 C 1.38809 * 120.00064 * 179.97438 * 15 14 11 18 18 N 1.31623 * 119.99784 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47077 * 90.00813 * 19 17 15 21 21 H 1.48504 * 109.47378 * 210.00662 * 19 17 15 22 22 H 1.48498 * 109.47479 * 330.00477 * 19 17 15 23 23 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 24 24 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 25 25 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 26 26 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 27 27 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 28 28 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 29 29 H 1.09003 * 109.46714 * 299.99738 * 13 11 10 30 30 H 1.08999 * 109.47109 * 59.99643 * 13 11 10 31 31 H 1.08994 * 109.47071 * 180.02562 * 13 11 10 32 32 H 0.97001 * 119.99717 * 24.99756 * 14 11 10 33 33 H 0.97002 * 119.99370 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5336 -5.8594 -0.0007 12 1 4.0850 -5.7301 -0.9321 13 6 3.0776 -7.3145 0.1243 14 7 4.4000 -5.5202 1.1309 15 6 5.7381 -5.8065 1.0786 16 1 6.1547 -6.2820 0.2030 17 6 6.5591 -5.4847 2.1505 18 7 6.0514 -4.9047 3.2175 19 14 8.3846 -5.8746 2.0789 20 1 9.1145 -4.7212 1.4942 21 1 8.8893 -6.1357 3.4509 22 1 8.6012 -7.0770 1.2347 23 1 -0.3633 0.0008 1.0276 24 1 -0.3633 0.8895 -0.5146 25 1 -0.3633 -0.8904 -0.5131 26 1 3.6973 -3.3319 0.0002 27 1 1.7112 -5.1325 0.8894 28 1 1.7118 -5.1319 -0.8905 29 1 2.5262 -7.4436 1.0557 30 1 2.4329 -7.5668 -0.7176 31 1 3.9488 -7.9695 0.1245 32 1 4.0259 -5.0928 1.9172 33 1 6.6252 -4.6802 3.9667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662162933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:30 Heat of formation + Delta-G solvation = 19.416981 kcal Electronic energy + Delta-G solvation = -18217.276658 eV Core-core repulsion = 15212.057005 eV Total energy + Delta-G solvation = -3005.219653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06517 -40.62763 -37.93368 -35.28742 -34.35905 -33.65512 -30.69923 -29.70089 -28.04063 -27.01710 -25.62577 -23.42265 -21.80818 -21.23245 -19.55210 -19.37923 -18.45369 -17.26036 -17.07740 -16.79066 -16.11934 -15.75555 -15.40274 -15.18005 -14.81235 -14.11364 -13.98223 -13.87912 -13.64077 -13.48500 -13.41823 -13.04373 -12.75254 -12.54658 -12.46719 -12.15569 -11.68516 -11.64206 -11.48277 -11.16135 -10.96609 -10.93357 -10.80956 -10.13131 -8.99965 -7.89326 -5.17881 -1.38535 -0.24772 0.37888 0.80907 1.52187 1.53900 1.60643 1.82902 1.97327 2.60113 2.80742 3.45357 3.48148 3.64399 3.92209 3.99538 4.25428 4.42377 4.66652 4.68709 4.75784 4.78680 4.86828 5.11028 5.16412 5.28401 5.33148 5.59575 5.60990 6.31005 6.31648 6.53540 6.93828 7.39766 8.11648 8.35585 9.33239 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.005673 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.009970 B = 4934.202124 C = 6104.830587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.098 3.902 3 N -0.271 5.271 4 N -0.281 5.281 5 S 0.478 5.522 6 C -0.310 4.310 7 C 0.602 3.398 8 O -0.545 6.545 9 N -0.702 5.702 10 C 0.122 3.878 11 C 0.156 3.844 12 H 0.063 0.937 13 C -0.155 4.155 14 N -0.733 5.733 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.067 4.067 18 N -0.966 5.966 19 Si 0.961 3.039 20 H -0.287 1.287 21 H -0.305 1.305 22 H -0.272 1.272 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.408 0.592 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.373 0.627 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 5.388 -9.176 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 N -0.136 5.136 4 N -0.262 5.262 5 S 0.614 5.386 6 C -0.451 4.451 7 C 0.386 3.614 8 O -0.424 6.424 9 N -0.353 5.353 10 C -0.001 4.001 11 C 0.048 3.952 12 H 0.081 0.919 13 C -0.215 4.215 14 N -0.374 5.374 15 C -0.364 4.364 16 H 0.097 0.903 17 C -0.260 4.260 18 N -0.617 5.617 19 Si 0.792 3.208 20 H -0.214 1.214 21 H -0.232 1.232 22 H -0.197 1.197 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.245 0.755 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.205 0.795 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.340 6.240 -9.263 13.365 hybrid contribution 0.308 -0.559 0.810 1.031 sum -7.032 5.681 -8.454 12.377 Atomic orbital electron populations 1.20594 0.82160 1.05464 1.05052 1.23342 1.01247 0.84630 0.95835 1.70662 0.97082 1.28585 1.17308 1.78663 1.09710 1.17594 1.20184 1.82848 1.08340 0.99297 1.48117 1.27789 0.99140 0.99867 1.18259 1.16481 0.85696 0.82329 0.76883 1.90761 1.16409 1.83562 1.51693 1.45895 1.10014 1.06516 1.72900 1.21759 0.97025 0.78572 1.02772 1.20738 0.89805 0.93056 0.91628 0.91880 1.22229 1.00753 0.97116 1.01421 1.42632 1.04914 1.72456 1.17427 1.19558 0.85260 1.31080 1.00467 0.90275 1.25382 1.01486 1.02514 0.96622 1.69801 1.35551 1.49160 1.07168 0.85320 0.81536 0.77992 0.75965 1.21384 1.23187 1.19711 0.88529 0.88104 0.88580 0.75513 0.92014 0.88820 0.93804 0.90599 0.93771 0.79475 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.90 71.24 0.71 -0.79 16 2 C 0.10 2.59 7.00 42.65 0.30 2.89 16 3 N -0.27 -7.82 11.54 -48.18 -0.56 -8.37 16 4 N -0.28 -8.11 12.51 37.02 0.46 -7.65 16 5 S 0.48 12.34 23.05 -56.49 -1.30 11.03 16 6 C -0.31 -8.60 6.81 24.62 0.17 -8.44 16 7 C 0.60 18.13 7.80 86.59 0.68 18.81 16 8 O -0.54 -17.99 14.89 -4.12 -0.06 -18.05 16 9 N -0.70 -20.89 5.38 -466.62 -2.51 -23.40 16 10 C 0.12 3.53 5.23 86.38 0.45 3.98 16 11 C 0.16 5.09 3.05 44.99 0.14 5.23 16 12 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 13 C -0.15 -4.61 9.49 71.98 0.68 -3.92 16 14 N -0.73 -31.76 4.56 -322.94 -1.47 -33.24 16 15 C -0.23 -11.36 9.93 84.03 0.83 -10.53 16 16 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 17 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 18 N -0.97 -55.00 13.06 21.65 0.28 -54.71 16 19 Si 0.96 43.07 29.55 68.60 2.03 45.09 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.10 2.10 6.47 -2.39 -0.02 2.08 16 26 H 0.41 12.45 7.57 -92.71 -0.70 11.75 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.37 17.95 7.80 -92.71 -0.72 17.23 16 33 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -60.40 303.62 1.02 -59.38 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.27 Total: 25.75 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 4.42 Total: 4.16 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -3.80 Total: -127.37 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.06 Total: -18.05 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 12.34 SS G_CDS: -1.30 Total: 11.03 kcal Total: -60.40 1.02 -59.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662162933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.799 kcal (2) G-P(sol) polarization free energy of solvation -60.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds