Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31240 * 124.05446 * 2 1 4 4 N 1.27334 * 120.03640 * 180.33368 * 3 2 1 5 5 S 1.56634 * 109.74115 * 359.72053 * 4 3 2 6 6 C 1.38243 * 124.05190 * 179.82608 * 2 1 3 7 7 C 1.47170 * 128.47937 * 0.02562 * 6 2 1 8 8 O 1.21620 * 119.99936 * 359.69709 * 7 6 2 9 9 N 1.34771 * 119.99698 * 179.70236 * 7 6 2 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 14 14 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 15 15 C 1.36938 * 120.00424 * 154.99750 * 14 11 10 16 16 H 1.08006 * 119.99738 * 0.02562 * 15 14 11 17 17 C 1.38810 * 120.00380 * 179.97438 * 15 14 11 18 18 N 1.31611 * 119.99994 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99860 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47242 * 89.99648 * 19 17 15 21 21 H 1.48493 * 109.46816 * 210.00042 * 19 17 15 22 22 H 1.48504 * 109.47064 * 329.99740 * 19 17 15 23 23 H 1.09001 * 109.47294 * 270.17462 * 1 2 3 24 24 H 1.09001 * 109.47132 * 30.17497 * 1 2 3 25 25 H 1.08996 * 109.47049 * 150.16932 * 1 2 3 26 26 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 27 27 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 29 29 H 1.09002 * 109.47016 * 59.99741 * 13 11 10 30 30 H 1.09000 * 109.47400 * 180.02562 * 13 11 10 31 31 H 1.09004 * 109.46881 * 300.00361 * 13 11 10 32 32 H 0.97007 * 119.99919 * 335.00159 * 14 11 10 33 33 H 0.97003 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0064 5 16 3.9366 -0.5096 -0.0062 6 6 2.2811 -1.1454 0.0035 7 6 1.8393 -2.5492 0.0072 8 8 0.6521 -2.8131 0.0131 9 7 2.7504 -3.5423 0.0043 10 6 2.3106 -4.9398 0.0074 11 6 3.5334 -5.8593 0.0024 12 1 4.0892 -5.7298 0.9311 13 6 3.0769 -7.3144 -0.1200 14 7 4.3946 -5.5205 -1.1333 15 6 5.7329 -5.8068 -1.0873 16 1 6.1536 -6.2827 -0.2137 17 6 6.5488 -5.4863 -2.1636 18 7 7.8351 -5.7610 -2.1190 19 14 5.8211 -4.6638 -3.6747 20 1 5.8782 -3.1890 -3.5114 21 1 6.5988 -5.0593 -4.8763 22 1 4.4077 -5.0894 -3.8377 23 1 -0.3634 0.0031 1.0277 24 1 -0.3633 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 3.6973 -3.3319 -0.0007 27 1 1.7152 -5.1313 0.9002 28 1 1.7076 -5.1329 -0.8798 29 1 2.5211 -7.4439 -1.0487 30 1 3.9481 -7.9695 -0.1231 31 1 2.4362 -7.5665 0.7250 32 1 4.0167 -5.0933 -1.9180 33 1 8.4053 -5.5367 -2.8711 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662162940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = 44.391977 kcal Electronic energy + Delta-G solvation = -18309.774999 eV Core-core repulsion = 15305.638344 eV Total energy + Delta-G solvation = -3004.136656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06096 -39.52513 -36.67157 -33.89445 -33.38939 -32.05406 -29.66510 -28.71383 -27.08701 -25.87259 -23.51784 -22.32480 -20.56855 -20.09706 -18.59263 -18.11332 -17.17350 -16.23779 -15.92367 -15.46811 -14.69353 -14.55677 -14.17754 -13.88121 -13.22771 -13.15126 -13.06614 -12.68292 -12.54986 -12.37167 -12.24902 -11.74904 -11.62110 -11.03818 -10.92769 -10.52988 -10.43211 -10.20952 -10.07246 -9.95015 -9.84631 -9.71965 -9.12525 -9.02996 -7.46093 -5.90337 -3.28236 -0.37183 0.72616 1.37359 1.81501 2.91039 3.02639 3.25577 3.29731 3.36450 3.76453 4.43768 4.45862 4.68167 5.07569 5.13744 5.19558 5.38602 5.41957 5.54674 5.63006 5.83412 5.93889 5.98128 6.05293 6.28561 6.40797 6.58635 6.83572 7.39376 7.54808 7.84060 8.03196 8.27863 9.04888 9.77111 9.95397 11.27397 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.006281 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.959932 B = 4457.116175 C = 5433.232777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.097 3.903 3 N -0.255 5.255 4 N -0.259 5.259 5 S 0.439 5.561 6 C -0.296 4.296 7 C 0.599 3.401 8 O -0.525 6.525 9 N -0.707 5.707 10 C 0.112 3.888 11 C 0.163 3.837 12 H 0.065 0.935 13 C -0.163 4.163 14 N -0.749 5.749 15 C -0.250 4.250 16 H 0.093 0.907 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.875 3.125 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.277 1.277 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.409 0.591 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.362 0.638 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 7.674 5.460 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.121 5.121 4 N -0.240 5.240 5 S 0.575 5.425 6 C -0.436 4.436 7 C 0.382 3.618 8 O -0.403 6.403 9 N -0.358 5.358 10 C -0.012 4.012 11 C 0.054 3.946 12 H 0.083 0.917 13 C -0.223 4.223 14 N -0.393 5.393 15 C -0.380 4.380 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.575 5.575 19 Si 0.706 3.294 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.246 0.754 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.195 0.805 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.177 8.520 5.527 15.102 hybrid contribution -1.056 0.032 -1.283 1.662 sum -12.233 8.552 4.244 15.517 Atomic orbital electron populations 1.20502 0.83862 1.04887 1.04226 1.22944 1.00168 0.85091 0.96844 1.70629 0.97017 1.28020 1.16472 1.78801 1.09394 1.16307 1.19506 1.83017 1.09204 1.00671 1.49618 1.27840 0.98352 1.00199 1.17234 1.16437 0.85999 0.81983 0.77379 1.90780 1.15784 1.83171 1.50549 1.45945 1.10118 1.06479 1.73302 1.21888 0.98036 0.78931 1.02359 1.20509 0.89370 0.91954 0.92780 0.91713 1.22327 1.01226 0.98488 1.00268 1.42875 1.06306 1.73775 1.16374 1.19043 0.81865 1.34191 1.02865 0.88947 1.24646 0.95279 1.00876 0.97706 1.69683 1.03498 1.52404 1.31932 0.86701 0.78514 0.79815 0.84421 1.20905 1.21559 1.20299 0.89440 0.90032 0.88075 0.75396 0.90687 0.91213 0.93232 0.91696 0.93747 0.80537 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.89 36.01 0.36 -0.41 16 2 C 0.10 1.27 7.00 -82.84 -0.58 0.69 16 3 N -0.26 -3.64 11.54 33.42 0.39 -3.26 16 4 N -0.26 -3.70 12.51 60.35 0.75 -2.95 16 5 S 0.44 5.57 23.05 -107.50 -2.48 3.09 16 6 C -0.30 -4.00 6.81 -35.95 -0.24 -4.24 16 7 C 0.60 8.74 7.80 -12.64 -0.10 8.64 16 8 O -0.52 -8.46 14.90 5.26 0.08 -8.38 16 9 N -0.71 -10.18 5.38 -61.47 -0.33 -10.51 16 10 C 0.11 1.59 5.23 -4.04 -0.02 1.57 16 11 C 0.16 2.68 3.05 -67.93 -0.21 2.47 16 12 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 13 C -0.16 -2.47 9.49 37.16 0.35 -2.12 16 14 N -0.75 -15.50 4.36 -53.42 -0.23 -15.73 16 15 C -0.25 -6.34 10.41 -15.06 -0.16 -6.50 16 16 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 17 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 18 N -0.93 -27.43 13.97 55.49 0.78 -26.66 16 19 Si 0.88 20.69 27.74 -169.99 -4.71 15.98 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.10 1.12 6.47 -51.93 -0.34 0.79 16 26 H 0.41 5.94 7.57 -40.82 -0.31 5.64 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.36 7.57 5.66 -40.82 -0.23 7.34 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -29.97 300.51 -5.77 -35.75 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.85 Total: 7.82 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.69 Total: 0.32 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 1.35 Total: -59.10 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.71 Total: 15.98 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -2.48 Total: 3.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.97 -5.77 -35.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662162940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.140 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds