Wall clock time and date at job start Mon Mar 30 2020 00:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31240 * 124.05446 * 2 1 4 4 N 1.27334 * 120.03640 * 180.33368 * 3 2 1 5 5 S 1.56634 * 109.74115 * 359.72053 * 4 3 2 6 6 C 1.38243 * 124.05190 * 179.82608 * 2 1 3 7 7 C 1.47170 * 128.47937 * 0.02562 * 6 2 1 8 8 O 1.21620 * 119.99936 * 359.69709 * 7 6 2 9 9 N 1.34771 * 119.99698 * 179.70236 * 7 6 2 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 14 14 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 15 15 C 1.36938 * 120.00424 * 154.99750 * 14 11 10 16 16 H 1.08006 * 119.99738 * 0.02562 * 15 14 11 17 17 C 1.38810 * 120.00380 * 179.97438 * 15 14 11 18 18 N 1.31611 * 119.99994 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99860 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47242 * 89.99648 * 19 17 15 21 21 H 1.48493 * 109.46816 * 210.00042 * 19 17 15 22 22 H 1.48504 * 109.47064 * 329.99740 * 19 17 15 23 23 H 1.09001 * 109.47294 * 270.17462 * 1 2 3 24 24 H 1.09001 * 109.47132 * 30.17497 * 1 2 3 25 25 H 1.08996 * 109.47049 * 150.16932 * 1 2 3 26 26 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 27 27 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 29 29 H 1.09002 * 109.47016 * 59.99741 * 13 11 10 30 30 H 1.09000 * 109.47400 * 180.02562 * 13 11 10 31 31 H 1.09004 * 109.46881 * 300.00361 * 13 11 10 32 32 H 0.97007 * 119.99919 * 335.00159 * 14 11 10 33 33 H 0.97003 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0064 5 16 3.9366 -0.5096 -0.0062 6 6 2.2811 -1.1454 0.0035 7 6 1.8393 -2.5492 0.0072 8 8 0.6521 -2.8131 0.0131 9 7 2.7504 -3.5423 0.0043 10 6 2.3106 -4.9398 0.0074 11 6 3.5334 -5.8593 0.0024 12 1 4.0892 -5.7298 0.9311 13 6 3.0769 -7.3144 -0.1200 14 7 4.3946 -5.5205 -1.1333 15 6 5.7329 -5.8068 -1.0873 16 1 6.1536 -6.2827 -0.2137 17 6 6.5488 -5.4863 -2.1636 18 7 7.8351 -5.7610 -2.1190 19 14 5.8211 -4.6638 -3.6747 20 1 5.8782 -3.1890 -3.5114 21 1 6.5988 -5.0593 -4.8763 22 1 4.4077 -5.0894 -3.8377 23 1 -0.3634 0.0031 1.0277 24 1 -0.3633 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 3.6973 -3.3319 -0.0007 27 1 1.7152 -5.1313 0.9002 28 1 1.7076 -5.1329 -0.8798 29 1 2.5211 -7.4439 -1.0487 30 1 3.9481 -7.9695 -0.1231 31 1 2.4362 -7.5665 0.7250 32 1 4.0167 -5.0933 -1.9180 33 1 8.4053 -5.5367 -2.8711 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662162940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:32 Heat of formation + Delta-G solvation = 22.441484 kcal Electronic energy + Delta-G solvation = -18310.726844 eV Core-core repulsion = 15305.638344 eV Total energy + Delta-G solvation = -3005.088500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10341 -40.68274 -38.08773 -35.34970 -34.39197 -33.78498 -31.30128 -29.78075 -28.06826 -27.04329 -25.34334 -23.44002 -21.87846 -21.32809 -19.85661 -19.59246 -18.47914 -17.31885 -17.09968 -16.90964 -16.09268 -15.96172 -15.39865 -15.15730 -14.68926 -14.44025 -14.14293 -13.95434 -13.76251 -13.55164 -13.43621 -13.25683 -12.85687 -12.56913 -12.46267 -12.12123 -11.77969 -11.70065 -11.51622 -11.19804 -11.00983 -10.98712 -10.84314 -10.18814 -9.33138 -7.98430 -5.32051 -1.42319 -0.28840 0.33834 0.78046 1.38590 1.40863 1.47824 1.79927 1.90816 2.49628 2.77666 3.33687 3.44606 3.52886 3.65752 3.92108 4.22909 4.35789 4.61968 4.67936 4.73590 4.76594 4.83457 5.04630 5.14311 5.25660 5.28719 5.56985 5.84013 6.24142 6.26187 6.50303 6.89098 7.11107 7.85638 8.03523 9.22723 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.006281 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.959932 B = 4457.116175 C = 5433.232777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.099 3.901 3 N -0.270 5.270 4 N -0.278 5.278 5 S 0.468 5.532 6 C -0.309 4.309 7 C 0.604 3.396 8 O -0.540 6.540 9 N -0.708 5.708 10 C 0.120 3.880 11 C 0.160 3.840 12 H 0.064 0.936 13 C -0.156 4.156 14 N -0.750 5.750 15 C -0.220 4.220 16 H 0.065 0.935 17 C -0.054 4.054 18 N -0.981 5.981 19 Si 0.935 3.065 20 H -0.273 1.273 21 H -0.304 1.304 22 H -0.257 1.257 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.409 0.591 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.363 0.637 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.421 8.189 5.626 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 N -0.136 5.136 4 N -0.259 5.259 5 S 0.605 5.395 6 C -0.450 4.450 7 C 0.388 3.612 8 O -0.419 6.419 9 N -0.360 5.360 10 C -0.003 4.003 11 C 0.052 3.948 12 H 0.082 0.918 13 C -0.217 4.217 14 N -0.394 5.394 15 C -0.351 4.351 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.631 5.631 19 Si 0.763 3.237 20 H -0.199 1.199 21 H -0.231 1.231 22 H -0.182 1.182 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.245 0.755 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.197 0.803 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.426 9.039 5.723 17.167 hybrid contribution -0.404 -0.180 -1.211 1.289 sum -13.829 8.859 4.512 17.032 Atomic orbital electron populations 1.20606 0.82075 1.05337 1.05287 1.23360 1.01262 0.84597 0.95648 1.70668 0.97049 1.28638 1.17204 1.78699 1.09728 1.17420 1.20023 1.82889 1.08507 0.99639 1.48498 1.27800 0.98941 0.99917 1.18346 1.16440 0.85690 0.82207 0.76883 1.90774 1.16303 1.83473 1.51326 1.45955 1.10068 1.06629 1.73322 1.21815 0.96754 0.78220 1.03533 1.20709 0.89681 0.93348 0.91030 0.91797 1.22213 1.00798 0.96671 1.01970 1.42861 1.05029 1.73743 1.17784 1.18985 0.83761 1.31206 1.01153 0.91713 1.25306 0.95546 1.02847 1.00892 1.69851 1.05193 1.55261 1.32814 0.85720 0.78427 0.79264 0.80277 1.19867 1.23143 1.18191 0.87970 0.88379 0.88717 0.75513 0.88463 0.91066 0.92982 0.94117 0.90345 0.80333 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 9.89 71.24 0.70 -0.64 16 2 C 0.10 2.42 7.00 42.65 0.30 2.71 16 3 N -0.27 -7.30 11.54 -48.18 -0.56 -7.85 16 4 N -0.28 -7.58 12.51 37.02 0.46 -7.11 16 5 S 0.47 11.20 23.05 -56.49 -1.30 9.90 16 6 C -0.31 -7.78 6.81 24.62 0.17 -7.62 16 7 C 0.60 16.25 7.80 86.59 0.68 16.92 16 8 O -0.54 -16.07 14.90 -4.09 -0.06 -16.13 16 9 N -0.71 -18.70 5.38 -466.63 -2.51 -21.21 16 10 C 0.12 3.05 5.23 86.38 0.45 3.51 16 11 C 0.16 4.89 3.05 44.99 0.14 5.02 16 12 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 13 C -0.16 -4.37 9.49 71.98 0.68 -3.69 16 14 N -0.75 -29.77 4.36 -322.94 -1.41 -31.18 16 15 C -0.22 -11.12 10.41 84.03 0.87 -10.24 16 16 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 17 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 18 N -0.98 -59.28 13.97 21.65 0.30 -58.97 16 19 Si 0.93 42.35 27.74 68.60 1.90 44.25 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.26 -10.64 6.52 99.48 0.65 -9.99 16 23 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.91 6.47 -2.39 -0.02 1.89 16 26 H 0.41 11.03 7.57 -92.71 -0.70 10.33 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.36 14.31 5.66 -92.70 -0.52 13.78 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -63.83 300.51 1.16 -62.67 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.13 Total: 22.14 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.46 Total: 3.50 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -3.71 Total: -126.33 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.06 Total: -16.13 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.90 Total: 44.25 kcal Atomic # 16 Polarization: 11.20 SS G_CDS: -1.30 Total: 9.90 kcal Total: -63.83 1.16 -62.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662162940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.112 kcal (2) G-P(sol) polarization free energy of solvation -63.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds