Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00170 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99493 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47263 * 60.00099 * 11 9 7 13 13 H 1.48504 * 109.46714 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47358 * 299.99836 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21563 * 120.00432 * 0.02562 * 16 15 2 18 18 C 1.47760 * 119.99726 * 180.02562 * 16 15 2 19 19 C 1.39345 * 124.11571 * 180.02562 * 18 16 15 20 20 N 1.30092 * 112.14593 * 179.97438 * 19 18 16 21 21 S 1.55917 * 108.75315 * 359.97438 * 20 19 18 22 22 N 1.31493 * 124.11419 * 359.69600 * 18 16 15 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 27 27 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 28 28 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 29 29 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 30 30 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 31 31 H 0.97001 * 120.00048 * 180.02562 * 10 9 7 32 32 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 33 33 H 1.07997 * 123.93008 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 5.0066 -2.5802 4.7285 11 14 7.6886 -2.0445 4.2809 12 1 8.2008 -0.6590 4.4324 13 1 7.9202 -2.7978 5.5395 14 1 8.3999 -2.7159 3.1636 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8585 1.1613 -2.4116 18 6 2.6392 -0.7150 -3.5636 19 6 2.8054 -0.1047 -4.8053 20 7 3.2517 -0.9335 -5.7032 21 16 3.4404 -2.3336 -5.0434 22 7 2.9795 -1.9847 -3.5948 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4261 29 1 3.8531 0.4370 1.3574 30 1 3.4258 -1.7358 3.1107 31 1 5.3298 -3.0372 5.5207 32 1 2.2491 -1.6318 -1.1525 33 1 2.5889 0.9353 -4.9996 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667987252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = 26.916372 kcal Electronic energy + Delta-G solvation = -17880.508508 eV Core-core repulsion = 14875.614054 eV Total energy + Delta-G solvation = -3004.894455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31333 -39.33753 -36.56154 -34.44705 -33.88024 -31.86152 -30.64481 -27.90626 -27.59592 -24.24534 -23.45727 -21.61563 -20.77936 -20.46499 -19.59169 -17.91958 -16.99943 -16.34556 -16.18374 -15.53447 -14.88440 -14.50848 -14.23503 -13.86176 -13.48854 -13.33755 -12.86327 -12.52584 -12.42790 -11.91198 -11.67985 -11.44236 -11.28412 -11.22777 -11.03119 -10.79940 -10.66409 -10.59113 -10.17433 -10.07301 -9.70234 -9.48700 -9.08535 -8.86065 -6.92714 -5.76720 -3.05469 0.18439 1.13803 1.32423 1.36855 2.98119 3.03011 3.44248 3.48397 3.49598 4.24360 4.56113 4.63978 4.87283 4.93694 5.19356 5.21247 5.32448 5.54897 5.70004 5.73054 5.90372 5.97594 6.12297 6.22396 6.25944 6.32094 6.44777 6.80845 6.84862 7.42404 7.69593 8.02335 8.42364 9.53386 10.10912 10.45750 11.46184 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.004201 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.478171 B = 6663.657304 C = 7710.247500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 N -0.695 5.695 16 C 0.604 3.396 17 O -0.528 6.528 18 C 0.013 3.987 19 C 0.089 3.911 20 N -0.580 5.580 21 S 0.718 5.282 22 N -0.543 5.543 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.411 0.589 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 1.413 -18.906 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.173 4.173 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.213 1.213 15 N -0.346 5.346 16 C 0.384 3.616 17 O -0.404 6.404 18 C -0.162 4.162 19 C -0.105 4.105 20 N -0.421 5.421 21 S 0.759 5.241 22 N -0.392 5.392 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.247 0.753 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.934 0.475 -19.761 21.300 hybrid contribution 0.427 0.868 1.167 1.516 sum -7.507 1.343 -18.594 20.097 Atomic orbital electron populations 1.22170 0.95059 1.02219 1.02521 1.21114 0.93827 0.97801 0.83297 0.88896 1.22076 0.98136 1.00924 0.96208 1.20645 0.90335 0.95660 0.90824 1.42346 1.05377 1.64963 1.25092 1.19184 0.83841 1.28590 1.05527 0.91338 1.24731 0.97696 1.00851 0.97638 1.69644 1.32879 1.40672 1.15101 0.86265 0.85130 0.77509 0.77278 1.21246 1.21629 1.21293 1.45976 1.64999 1.14821 1.08829 1.16729 0.77890 0.85564 0.81416 1.90819 1.50779 1.14485 1.84291 1.22607 1.06535 0.88778 0.98276 1.23781 0.97505 1.02666 0.86545 1.72262 1.22777 1.09372 1.37708 1.79111 1.43496 1.12732 0.88719 1.72481 1.18840 1.19130 1.28784 0.91201 0.92283 0.92397 0.89939 0.91221 0.96388 0.96361 0.78294 0.93458 0.75287 0.76934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 2 C 0.14 1.90 2.57 -67.93 -0.17 1.72 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -2.06 4.87 -26.73 -0.13 -2.19 16 5 C 0.15 3.07 6.15 -4.04 -0.02 3.05 16 6 N -0.73 -18.71 5.60 -59.90 -0.34 -19.05 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 10 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 11 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 N -0.70 -9.09 4.53 -54.78 -0.25 -9.34 16 16 C 0.60 8.19 7.79 -12.37 -0.10 8.09 16 17 O -0.53 -8.17 16.47 5.31 0.09 -8.08 16 18 C 0.01 0.16 6.81 -83.71 -0.57 -0.41 16 19 C 0.09 0.92 11.22 -17.88 -0.20 0.72 16 20 N -0.58 -5.95 11.41 19.42 0.22 -5.73 16 21 S 0.72 6.18 23.69 -107.50 -2.55 3.63 16 22 N -0.54 -6.17 11.00 23.17 0.25 -5.92 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.41 5.22 8.19 -40.82 -0.33 4.89 16 33 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -32.81 305.25 -7.30 -40.12 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.95 Total: 7.74 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.09 Total: 2.07 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: 0.62 Total: -67.64 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -2.55 Total: 3.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.81 -7.30 -40.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667987252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.033 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds