Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00170 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99493 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47263 * 60.00099 * 11 9 7 13 13 H 1.48504 * 109.46714 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47358 * 299.99836 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21563 * 120.00432 * 0.02562 * 16 15 2 18 18 C 1.47760 * 119.99726 * 180.02562 * 16 15 2 19 19 C 1.39345 * 124.11571 * 180.02562 * 18 16 15 20 20 N 1.30092 * 112.14593 * 179.97438 * 19 18 16 21 21 S 1.55917 * 108.75315 * 359.97438 * 20 19 18 22 22 N 1.31493 * 124.11419 * 359.69600 * 18 16 15 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 27 27 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 28 28 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 29 29 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 30 30 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 31 31 H 0.97001 * 120.00048 * 180.02562 * 10 9 7 32 32 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 33 33 H 1.07997 * 123.93008 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 5.0066 -2.5802 4.7285 11 14 7.6886 -2.0445 4.2809 12 1 8.2008 -0.6590 4.4324 13 1 7.9202 -2.7978 5.5395 14 1 8.3999 -2.7159 3.1636 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8585 1.1613 -2.4116 18 6 2.6392 -0.7150 -3.5636 19 6 2.8054 -0.1047 -4.8053 20 7 3.2517 -0.9335 -5.7032 21 16 3.4404 -2.3336 -5.0434 22 7 2.9795 -1.9847 -3.5948 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4261 29 1 3.8531 0.4370 1.3574 30 1 3.4258 -1.7358 3.1107 31 1 5.3298 -3.0372 5.5207 32 1 2.2491 -1.6318 -1.1525 33 1 2.5889 0.9353 -4.9996 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667987252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = 2.168482 kcal Electronic energy + Delta-G solvation = -17881.581657 eV Core-core repulsion = 14875.614054 eV Total energy + Delta-G solvation = -3005.967604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.17876 -40.36043 -37.86515 -36.14612 -34.79916 -33.52652 -32.06383 -29.44535 -28.46789 -25.92549 -24.60970 -23.17146 -21.94801 -21.47786 -20.37695 -19.32055 -18.66941 -17.38320 -17.11421 -16.70702 -16.35374 -15.76264 -15.47092 -15.39246 -15.15211 -14.83999 -14.28275 -13.62873 -13.30072 -13.09814 -12.89392 -12.87198 -12.51330 -12.36744 -12.31278 -12.27278 -12.09712 -12.01551 -11.93496 -11.65121 -11.20728 -10.94656 -10.33524 -10.07142 -9.01994 -7.96817 -5.25977 -0.65220 0.35318 0.46069 0.62865 1.46441 1.49267 1.55642 1.98775 2.04734 2.54732 3.36656 3.39711 3.59412 3.74492 4.04063 4.05520 4.16087 4.38576 4.47928 4.56517 4.64023 4.76721 4.85703 4.98357 5.18897 5.27143 5.31616 5.33685 5.46699 5.50238 6.25615 6.38893 6.99200 7.32258 8.07242 8.31671 9.26310 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.004201 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.478171 B = 6663.657304 C = 7710.247500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 H 0.081 0.919 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.745 5.745 7 C -0.252 4.252 8 H 0.070 0.930 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.972 3.028 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.278 1.278 15 N -0.695 5.695 16 C 0.604 3.396 17 O -0.553 6.553 18 C -0.006 4.006 19 C 0.089 3.911 20 N -0.597 5.597 21 S 0.791 5.209 22 N -0.567 5.567 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.376 0.624 31 H 0.253 0.747 32 H 0.413 0.587 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 1.105 -20.023 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 H 0.099 0.901 4 C -0.158 4.158 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.383 4.383 8 H 0.088 0.912 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.204 1.204 15 N -0.346 5.346 16 C 0.385 3.615 17 O -0.431 6.431 18 C -0.179 4.179 19 C -0.103 4.103 20 N -0.439 5.439 21 S 0.833 5.167 22 N -0.419 5.419 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.208 0.792 31 H 0.062 0.938 32 H 0.249 0.751 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.766 0.196 -20.909 22.306 hybrid contribution 0.396 0.900 1.403 1.713 sum -7.370 1.096 -19.507 20.881 Atomic orbital electron populations 1.22095 0.93026 1.03012 1.02999 1.21002 0.95267 0.96703 0.82433 0.90102 1.21915 0.94542 1.01728 0.97571 1.20768 0.93583 0.94335 0.88663 1.42543 1.04497 1.65332 1.26476 1.19557 0.85302 1.27978 1.05490 0.91217 1.25539 1.02013 1.01054 0.97717 1.69791 1.34687 1.41731 1.15500 0.85236 0.80075 0.77626 0.76969 1.20516 1.21772 1.20415 1.45974 1.64954 1.14865 1.08792 1.16921 0.77370 0.85325 0.81882 1.90797 1.51958 1.15494 1.84815 1.22357 1.08266 0.89130 0.98149 1.23888 0.97127 1.03287 0.85970 1.72197 1.23291 1.10306 1.38141 1.78824 1.40486 1.10980 0.86426 1.72298 1.19439 1.19180 1.30997 0.89955 0.92559 0.91432 0.89452 0.90594 0.96487 0.97093 0.79183 0.93840 0.75051 0.75689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.48 71.98 0.68 -2.49 16 2 C 0.15 3.84 2.57 44.99 0.12 3.95 16 3 H 0.08 2.29 7.58 -2.39 -0.02 2.27 16 4 C -0.12 -3.54 4.87 30.59 0.15 -3.39 16 5 C 0.15 6.11 6.15 86.38 0.53 6.65 16 6 N -0.75 -38.13 5.60 -343.44 -1.92 -40.05 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 10 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 11 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 N -0.70 -17.73 4.53 -445.49 -2.02 -19.75 16 16 C 0.60 16.12 7.79 86.76 0.68 16.79 16 17 O -0.55 -17.02 16.47 -3.92 -0.06 -17.08 16 18 C -0.01 -0.14 6.81 41.98 0.29 0.15 16 19 C 0.09 1.75 11.22 85.22 0.96 2.71 16 20 N -0.60 -11.21 11.41 -92.48 -1.06 -12.26 16 21 S 0.79 12.05 23.69 -56.49 -1.34 10.71 16 22 N -0.57 -12.16 11.00 -80.60 -0.89 -13.04 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.02 0.69 7.75 -2.39 -0.02 0.68 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.38 20.08 7.67 -92.71 -0.71 19.37 16 31 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.41 10.19 8.19 -92.71 -0.76 9.44 16 33 H 0.23 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -68.92 305.25 -0.59 -69.51 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.32 Total: 25.04 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.70 Total: 7.32 kcal Atomic # 7 Polarization: -138.17 SS G_CDS: -5.60 Total: -143.77 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.06 Total: -17.08 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 12.05 SS G_CDS: -1.34 Total: 10.71 kcal Total: -68.92 -0.59 -69.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667987252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.680 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds