Wall clock time and date at job start Mon Mar 30 2020 01:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99877 * 2 1 4 4 C 1.53008 * 109.46628 * 90.00120 * 3 2 1 5 5 C 1.53002 * 109.46656 * 179.97438 * 4 3 2 6 6 N 1.46508 * 109.46829 * 180.02562 * 5 4 3 7 7 C 1.36935 * 120.00140 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99426 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99903 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00382 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99604 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47278 * 60.00106 * 11 9 7 13 13 H 1.48500 * 109.46957 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47291 * 299.99499 * 11 9 7 15 15 C 1.34777 * 120.00502 * 180.02562 * 2 1 3 16 16 O 1.21564 * 120.00335 * 185.44782 * 15 2 1 17 17 C 1.47757 * 119.99377 * 5.44313 * 15 2 1 18 18 C 1.39356 * 124.11345 * 186.05479 * 17 15 2 19 19 N 1.30086 * 112.14338 * 179.84869 * 18 17 15 20 20 S 1.55929 * 108.75629 * 0.40613 * 19 18 17 21 21 N 1.31491 * 124.12022 * 6.36320 * 17 15 2 22 22 H 1.08998 * 109.46962 * 95.38289 * 1 2 3 23 23 H 1.08993 * 109.47046 * 215.38220 * 1 2 3 24 24 H 1.09000 * 109.47416 * 335.38148 * 1 2 3 25 25 H 1.09001 * 109.47504 * 209.99790 * 3 2 1 26 26 H 1.09000 * 109.47311 * 330.00687 * 3 2 1 27 27 H 1.08996 * 109.47128 * 299.99638 * 4 3 2 28 28 H 1.09000 * 109.46812 * 60.00261 * 4 3 2 29 29 H 1.08996 * 109.47124 * 299.99723 * 5 4 3 30 30 H 1.09000 * 109.47229 * 60.00599 * 5 4 3 31 31 H 0.97001 * 119.99714 * 359.97438 * 6 5 4 32 32 H 0.97002 * 119.99990 * 180.02562 * 10 9 7 33 33 H 1.08001 * 123.92455 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4426 5 6 3.2180 3.0351 1.4426 6 7 3.4627 3.4576 2.8239 7 6 4.1359 4.6235 3.0743 8 1 4.4868 5.2313 2.2533 9 6 4.3682 5.0235 4.3830 10 7 3.9409 4.2826 5.3834 11 14 5.2859 6.6144 4.7244 12 1 4.5421 7.7528 4.1279 13 1 5.4031 6.8132 6.1914 14 1 6.6428 6.5414 4.1255 15 6 2.1390 -1.1671 -0.0005 16 8 3.3505 -1.1695 0.0994 17 6 1.4052 -2.4438 -0.1225 18 6 1.9984 -3.6999 -0.0117 19 7 1.1364 -4.6636 -0.1546 20 16 -0.2708 -4.0434 -0.4127 21 7 0.1140 -2.5331 -0.3545 22 1 -0.3633 -0.0964 -1.0231 23 1 -0.3633 -0.8378 0.5950 24 1 -0.3634 0.9342 0.4281 25 1 3.1500 1.1385 -0.5138 26 1 1.6084 2.0285 -0.5137 27 1 1.5001 1.8407 1.9564 28 1 3.0416 0.9507 1.9563 29 1 4.1704 2.9043 0.9290 30 1 2.6293 3.7950 0.9288 31 1 3.1471 2.9119 3.5612 32 1 4.1030 4.5623 6.2979 33 1 3.0509 -3.8552 0.1742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670027514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:19 Heat of formation + Delta-G solvation = 22.877844 kcal Electronic energy + Delta-G solvation = -17787.095229 eV Core-core repulsion = 14782.025651 eV Total energy + Delta-G solvation = -3005.069578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27210 -40.31046 -37.57518 -36.52637 -34.80513 -33.85110 -31.58976 -28.75838 -27.98351 -26.73943 -25.01004 -23.36263 -22.42164 -20.63760 -20.45355 -19.15266 -18.26700 -17.36070 -17.28825 -16.66632 -16.33298 -15.95901 -15.88266 -15.30403 -15.15223 -14.61072 -14.05151 -13.78132 -13.39385 -13.36158 -13.11933 -12.77117 -12.72855 -12.46150 -12.40212 -12.21074 -12.08152 -11.86699 -11.81599 -11.71464 -11.10952 -10.92876 -10.25217 -9.73955 -9.02069 -7.95666 -5.25683 -0.65940 0.35493 0.43947 0.65073 1.47171 1.51397 1.57367 1.84166 1.98019 2.56550 3.28288 3.37797 3.54388 3.85825 4.01845 4.03580 4.23644 4.39013 4.47367 4.53758 4.59914 4.73147 4.75551 4.89492 5.03169 5.24143 5.30659 5.34774 5.48461 5.50498 6.20058 6.26284 6.89344 7.31823 8.07537 8.30623 9.28089 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.045837 B = 0.003067 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.709259 B = 9127.938204 C = 9226.314595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.594 5.594 3 C 0.128 3.872 4 C -0.123 4.123 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.079 0.921 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.979 3.021 12 H -0.274 1.274 13 H -0.295 1.295 14 H -0.278 1.278 15 C 0.592 3.408 16 O -0.558 6.558 17 C -0.004 4.004 18 C 0.086 3.914 19 N -0.600 5.600 20 S 0.790 5.210 21 N -0.546 5.546 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.372 0.628 32 H 0.252 0.748 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -17.101 -15.766 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.325 5.325 3 C 0.006 3.994 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.393 5.393 7 C -0.382 4.382 8 H 0.096 0.904 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.807 3.193 12 H -0.200 1.200 13 H -0.221 1.221 14 H -0.204 1.204 15 C 0.375 3.625 16 O -0.436 6.436 17 C -0.176 4.176 18 C -0.105 4.105 19 N -0.442 5.442 20 S 0.832 5.168 21 N -0.399 5.399 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.446 -17.893 -16.110 28.078 hybrid contribution 2.179 1.341 1.179 2.817 sum -12.267 -16.552 -14.931 25.444 Atomic orbital electron populations 1.22168 0.76380 1.03697 1.03507 1.47799 1.09015 1.04993 1.70666 1.21476 0.98032 0.84089 0.95844 1.21873 1.00174 0.96385 0.97774 1.20712 0.96592 0.93933 0.85981 1.42613 1.68209 1.25432 1.03023 1.19663 1.27384 0.98892 0.92224 0.90356 1.25653 1.03229 1.02716 0.95441 1.69826 1.53256 1.40904 0.98296 0.85140 0.78589 0.79317 0.76281 1.19972 1.22071 1.20406 1.17205 0.85802 0.82531 0.76963 1.90838 1.14360 1.86852 1.51566 1.22133 0.88698 0.97028 1.09781 1.23796 1.03112 0.85005 0.98613 1.72142 1.09647 1.38527 1.23906 1.78813 1.10490 0.84899 1.42625 1.72740 1.17478 1.28764 1.20911 0.90691 0.89860 0.89883 0.90455 0.86931 0.91574 0.94027 0.96419 0.94713 0.79688 0.93946 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 9.23 127.77 1.18 2.66 16 2 N -0.59 -14.37 2.87 -850.28 -2.44 -16.81 16 3 C 0.13 3.32 5.34 86.38 0.46 3.79 16 4 C -0.12 -4.16 5.65 30.60 0.17 -3.98 16 5 C 0.15 6.35 6.26 86.38 0.54 6.89 16 6 N -0.75 -40.12 5.60 -343.44 -1.92 -42.04 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 10 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 11 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 C 0.59 16.22 7.66 86.76 0.66 16.88 16 16 O -0.56 -19.21 16.45 -3.92 -0.06 -19.27 16 17 C 0.00 -0.09 6.51 41.98 0.27 0.18 16 18 C 0.09 1.69 11.23 85.22 0.96 2.65 16 19 N -0.60 -10.52 11.41 -92.44 -1.05 -11.57 16 20 S 0.79 9.21 23.69 -56.49 -1.34 7.87 16 21 N -0.55 -9.22 7.94 -80.58 -0.64 -9.86 16 22 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 23 H 0.08 1.46 5.90 -2.39 -0.01 1.45 16 24 H 0.08 1.28 8.03 -2.39 -0.02 1.26 16 25 H 0.08 2.18 7.50 -2.39 -0.02 2.16 16 26 H 0.11 2.25 8.07 -2.39 -0.02 2.23 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.37 21.22 7.67 -92.71 -0.71 20.51 16 32 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -73.52 301.30 0.83 -72.69 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.43 Total: 19.70 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 5.56 Total: 11.27 kcal Atomic # 7 Polarization: -135.50 SS G_CDS: -5.78 Total: -141.28 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.27 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 9.21 SS G_CDS: -1.34 Total: 7.87 kcal Total: -73.52 0.83 -72.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670027514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.570 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds