Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31233 * 124.05460 * 2 1 4 4 N 1.27337 * 120.03733 * 179.97438 * 3 2 1 5 5 S 1.56636 * 109.73872 * 359.97438 * 4 3 2 6 6 C 1.38245 * 124.05076 * 179.97438 * 2 1 3 7 7 C 1.47173 * 128.47815 * 0.03923 * 6 2 1 8 8 O 1.21614 * 120.00065 * 351.82451 * 7 6 2 9 9 N 1.34777 * 119.99749 * 171.82880 * 7 6 2 10 10 C 1.46503 * 120.00242 * 1.67993 * 9 7 6 11 11 C 1.46501 * 119.99843 * 181.68343 * 9 7 6 12 12 C 1.53008 * 109.46871 * 89.99937 * 11 9 7 13 13 N 1.46501 * 109.46871 * 179.97438 * 12 11 9 14 14 C 1.36932 * 119.99969 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00150 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46944 * 60.00439 * 18 16 14 20 20 H 1.48499 * 109.47186 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47125 * 300.00342 * 18 16 14 22 22 H 1.08997 * 109.47194 * 270.04712 * 1 2 3 23 23 H 1.09000 * 109.46748 * 30.04507 * 1 2 3 24 24 H 1.08994 * 109.46935 * 150.04189 * 1 2 3 25 25 H 1.09007 * 109.46790 * 83.68358 * 10 9 7 26 26 H 1.08991 * 109.47201 * 203.68089 * 10 9 7 27 27 H 1.08993 * 109.47129 * 323.68726 * 10 9 7 28 28 H 1.09000 * 109.47175 * 209.99658 * 11 9 7 29 29 H 1.08996 * 109.47186 * 329.99903 * 11 9 7 30 30 H 1.09000 * 109.46993 * 299.99832 * 12 11 9 31 31 H 1.08996 * 109.47244 * 60.00001 * 12 11 9 32 32 H 0.97006 * 120.00006 * 0.02562 * 13 12 11 33 33 H 0.96997 * 120.00580 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 0.0005 5 16 3.9366 -0.5097 0.0017 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0004 8 8 0.6622 -2.8163 0.1495 9 7 2.7392 -3.5389 -0.1650 10 6 4.1618 -3.2192 -0.3077 11 6 2.2947 -4.9344 -0.2021 12 6 1.9764 -5.3300 -1.6454 13 7 1.5325 -6.7256 -1.6826 14 6 1.1899 -7.3035 -2.8758 15 1 1.2472 -6.7306 -3.7895 16 6 0.7698 -8.6261 -2.9111 17 7 0.7004 -9.3245 -1.7977 18 14 0.3030 -9.4147 -4.5389 19 1 1.4704 -9.3845 -5.4562 20 1 -0.1085 -10.8226 -4.3069 21 1 -0.8243 -8.6638 -5.1474 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8896 -0.5145 24 1 -0.3633 -0.8903 -0.5132 25 1 4.6067 -3.0936 0.6795 26 1 4.6656 -4.0306 -0.8327 27 1 4.2713 -2.2955 -0.8757 28 1 3.0848 -5.5777 0.1851 29 1 1.4008 -5.0474 0.4113 30 1 1.1863 -4.6866 -2.0326 31 1 2.8702 -5.2169 -2.2588 32 1 1.4806 -7.2401 -0.8619 33 1 0.4065 -10.2486 -1.8222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691255805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = 59.703675 kcal Electronic energy + Delta-G solvation = -18086.745890 eV Core-core repulsion = 15083.273200 eV Total energy + Delta-G solvation = -3003.472690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12251 -39.81329 -36.18033 -34.52278 -33.46584 -31.54838 -29.29616 -28.05447 -27.20950 -26.45433 -24.07886 -22.43269 -21.29147 -19.42602 -18.88991 -17.33231 -17.21043 -16.45049 -16.06998 -15.35696 -14.69864 -14.49359 -14.09386 -13.71981 -13.51671 -13.28817 -13.20103 -13.02532 -12.99996 -12.84514 -12.40276 -11.75797 -11.43894 -11.10052 -10.95054 -10.73789 -10.27602 -10.18812 -10.10904 -9.94409 -9.88231 -9.76734 -8.91175 -8.76789 -6.98589 -5.79766 -3.09674 -0.45854 0.57824 1.28425 1.76648 2.68222 2.86625 3.43024 3.47476 3.48545 3.69340 4.19210 4.39762 4.58046 4.68215 5.01501 5.11002 5.32869 5.39407 5.43766 5.54781 5.57937 5.67311 5.89412 5.95073 6.00942 6.35699 6.60679 6.76765 7.13661 7.47552 7.66416 7.90232 8.38343 9.49581 10.04142 10.39202 11.42922 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035001 B = 0.003809 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.789472 B = 7350.110492 C = 7641.414864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.098 3.902 3 N -0.251 5.251 4 N -0.280 5.280 5 S 0.427 5.573 6 C -0.290 4.290 7 C 0.596 3.404 8 O -0.505 6.505 9 N -0.600 5.600 10 C 0.065 3.935 11 C 0.109 3.891 12 C 0.141 3.859 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.385 0.615 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 17.249 5.943 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.118 5.118 4 N -0.259 5.259 5 S 0.565 5.435 6 C -0.431 4.431 7 C 0.381 3.619 8 O -0.380 6.380 9 N -0.334 5.334 10 C -0.081 4.081 11 C -0.013 4.013 12 C 0.013 3.987 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.218 0.782 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.023 18.235 5.862 21.173 hybrid contribution -1.342 -1.184 -0.695 1.920 sum 7.681 17.052 5.167 19.402 Atomic orbital electron populations 1.20510 0.83735 1.04920 1.04389 1.22965 1.00258 0.85311 0.96301 1.70743 0.97113 1.28083 1.15848 1.78639 1.09424 1.18931 1.18947 1.82893 1.09965 0.99115 1.51514 1.27796 0.97951 1.00111 1.17230 1.16505 0.85754 0.81878 0.77796 1.90859 1.15931 1.82453 1.48807 1.47629 1.06924 1.07339 1.71469 1.22133 0.81655 1.01971 1.02303 1.21857 1.01628 0.77933 0.99843 1.20923 0.97044 0.88136 0.92625 1.42179 1.80302 1.07040 1.07941 1.19146 1.37257 0.94321 0.86549 0.91227 1.24744 1.02140 0.96751 0.97116 1.69642 1.53545 1.09511 1.25420 0.86240 0.78345 0.78395 0.83032 1.21229 1.21601 1.21187 0.89240 0.89931 0.88148 0.91176 0.88182 0.92015 0.89702 0.89016 0.95824 0.96278 0.78180 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.83 36.01 0.35 -0.44 16 2 C 0.10 1.21 7.00 -82.84 -0.58 0.63 16 3 N -0.25 -3.27 11.54 33.42 0.39 -2.89 16 4 N -0.28 -3.39 12.51 60.35 0.75 -2.63 16 5 S 0.43 3.92 19.06 -107.50 -2.05 1.87 16 6 C -0.29 -3.52 6.49 -35.95 -0.23 -3.75 16 7 C 0.60 8.52 7.65 -12.63 -0.10 8.42 16 8 O -0.50 -8.83 14.58 5.27 0.08 -8.75 16 9 N -0.60 -7.73 2.87 -182.95 -0.53 -8.26 16 10 C 0.07 0.55 9.08 59.85 0.54 1.09 16 11 C 0.11 1.70 5.51 -4.04 -0.02 1.67 16 12 C 0.14 2.81 6.58 -4.04 -0.03 2.78 16 13 N -0.73 -18.33 5.60 -59.91 -0.34 -18.66 16 14 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 18 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.10 1.19 6.66 -51.93 -0.35 0.85 16 25 H 0.07 0.43 7.99 -51.93 -0.42 0.02 16 26 H 0.10 0.77 8.02 -51.93 -0.42 0.35 16 27 H 0.06 0.47 4.58 -25.37 -0.12 0.35 16 28 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.09 1.58 7.40 -51.93 -0.38 1.20 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.38 9.99 7.67 -40.82 -0.31 9.68 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -33.41 296.84 -5.47 -38.89 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.65 Total: 2.85 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.31 Total: 3.08 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 1.00 Total: -59.66 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.05 Total: 1.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.41 -5.47 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691255805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.589 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds