Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31233 * 124.05460 * 2 1 4 4 N 1.27337 * 120.03733 * 179.97438 * 3 2 1 5 5 S 1.56636 * 109.73872 * 359.97438 * 4 3 2 6 6 C 1.38245 * 124.05076 * 179.97438 * 2 1 3 7 7 C 1.47173 * 128.47815 * 0.03923 * 6 2 1 8 8 O 1.21614 * 120.00065 * 351.82451 * 7 6 2 9 9 N 1.34777 * 119.99749 * 171.82880 * 7 6 2 10 10 C 1.46503 * 120.00242 * 1.67993 * 9 7 6 11 11 C 1.46501 * 119.99843 * 181.68343 * 9 7 6 12 12 C 1.53008 * 109.46871 * 89.99937 * 11 9 7 13 13 N 1.46501 * 109.46871 * 179.97438 * 12 11 9 14 14 C 1.36932 * 119.99969 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00150 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46944 * 60.00439 * 18 16 14 20 20 H 1.48499 * 109.47186 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47125 * 300.00342 * 18 16 14 22 22 H 1.08997 * 109.47194 * 270.04712 * 1 2 3 23 23 H 1.09000 * 109.46748 * 30.04507 * 1 2 3 24 24 H 1.08994 * 109.46935 * 150.04189 * 1 2 3 25 25 H 1.09007 * 109.46790 * 83.68358 * 10 9 7 26 26 H 1.08991 * 109.47201 * 203.68089 * 10 9 7 27 27 H 1.08993 * 109.47129 * 323.68726 * 10 9 7 28 28 H 1.09000 * 109.47175 * 209.99658 * 11 9 7 29 29 H 1.08996 * 109.47186 * 329.99903 * 11 9 7 30 30 H 1.09000 * 109.46993 * 299.99832 * 12 11 9 31 31 H 1.08996 * 109.47244 * 60.00001 * 12 11 9 32 32 H 0.97006 * 120.00006 * 0.02562 * 13 12 11 33 33 H 0.96997 * 120.00580 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 0.0005 5 16 3.9366 -0.5097 0.0017 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0004 8 8 0.6622 -2.8163 0.1495 9 7 2.7392 -3.5389 -0.1650 10 6 4.1618 -3.2192 -0.3077 11 6 2.2947 -4.9344 -0.2021 12 6 1.9764 -5.3300 -1.6454 13 7 1.5325 -6.7256 -1.6826 14 6 1.1899 -7.3035 -2.8758 15 1 1.2472 -6.7306 -3.7895 16 6 0.7698 -8.6261 -2.9111 17 7 0.7004 -9.3245 -1.7977 18 14 0.3030 -9.4147 -4.5389 19 1 1.4704 -9.3845 -5.4562 20 1 -0.1085 -10.8226 -4.3069 21 1 -0.8243 -8.6638 -5.1474 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8896 -0.5145 24 1 -0.3633 -0.8903 -0.5132 25 1 4.6067 -3.0936 0.6795 26 1 4.6656 -4.0306 -0.8327 27 1 4.2713 -2.2955 -0.8757 28 1 3.0848 -5.5777 0.1851 29 1 1.4008 -5.0474 0.4113 30 1 1.1863 -4.6866 -2.0326 31 1 2.8702 -5.2169 -2.2588 32 1 1.4806 -7.2401 -0.8619 33 1 0.4065 -10.2486 -1.8222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691255805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = 35.026282 kcal Electronic energy + Delta-G solvation = -18087.815982 eV Core-core repulsion = 15083.273200 eV Total energy + Delta-G solvation = -3004.542783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04205 -40.89862 -37.49627 -36.19510 -34.42583 -33.39342 -30.65485 -29.12867 -28.13982 -27.54118 -25.76642 -23.87900 -22.60983 -20.48569 -19.78300 -19.17477 -18.31388 -17.44881 -17.23796 -16.69325 -16.18068 -15.75588 -15.29704 -15.16392 -15.04487 -14.62340 -14.33177 -14.11065 -13.85231 -13.72674 -13.32767 -13.07292 -12.85647 -12.80480 -12.59434 -12.35768 -12.16246 -11.87358 -11.31364 -11.04033 -10.95526 -10.87377 -10.71950 -9.85920 -9.04934 -7.96598 -5.26909 -1.36402 -0.27817 0.43539 0.82639 1.47874 1.51335 1.56959 1.63919 1.82522 2.56574 2.80200 3.26920 3.37284 3.51671 3.92764 4.07558 4.13597 4.23096 4.24775 4.50040 4.57936 4.64130 4.72459 4.74777 4.95917 5.07537 5.15469 5.33551 5.48130 6.08936 6.25014 6.59186 6.83265 7.31900 8.03586 8.28404 9.26356 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035001 B = 0.003809 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.789472 B = 7350.110492 C = 7641.414864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.094 3.906 3 N -0.275 5.275 4 N -0.309 5.309 5 S 0.535 5.465 6 C -0.320 4.320 7 C 0.593 3.407 8 O -0.548 6.548 9 N -0.598 5.598 10 C 0.054 3.946 11 C 0.125 3.875 12 C 0.145 3.855 13 N -0.742 5.742 14 C -0.252 4.252 15 H 0.073 0.927 16 C -0.069 4.069 17 N -0.966 5.966 18 Si 0.974 3.026 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.281 1.281 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.001 0.999 31 H 0.034 0.966 32 H 0.377 0.623 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.997 17.913 5.556 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 N -0.140 5.140 4 N -0.289 5.289 5 S 0.673 5.327 6 C -0.460 4.460 7 C 0.380 3.620 8 O -0.427 6.427 9 N -0.330 5.330 10 C -0.090 4.090 11 C 0.002 3.998 12 C 0.017 3.983 13 N -0.386 5.386 14 C -0.383 4.383 15 H 0.091 0.909 16 C -0.262 4.262 17 N -0.616 5.616 18 Si 0.803 3.197 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.208 1.208 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.052 0.948 32 H 0.209 0.791 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.015 18.962 5.465 22.600 hybrid contribution -1.818 -1.349 -0.572 2.335 sum 9.198 17.613 4.893 20.464 Atomic orbital electron populations 1.20506 0.83301 1.04722 1.04883 1.23177 1.00927 0.85430 0.95877 1.70814 0.97410 1.28454 1.17324 1.78361 1.09412 1.21541 1.19551 1.82409 1.06308 0.96105 1.47916 1.27634 1.00556 0.98913 1.18939 1.16787 0.85354 0.82847 0.77053 1.90833 1.17818 1.83302 1.50759 1.47643 1.08672 1.05896 1.70782 1.22506 0.79001 1.02887 1.04595 1.21506 1.01848 0.79956 0.96517 1.20999 0.96402 0.85118 0.95757 1.42352 1.80423 1.08927 1.06870 1.19532 1.36478 0.94676 0.87653 0.90935 1.25561 1.02782 0.97433 1.00437 1.69790 1.54868 1.09540 1.27420 0.85212 0.78265 0.77029 0.79241 1.19989 1.21868 1.20759 0.88425 0.88427 0.89883 0.88023 0.86667 0.91163 0.87206 0.91135 0.98083 0.94804 0.79055 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.83 71.24 0.70 -0.88 16 2 C 0.09 2.26 7.00 42.65 0.30 2.56 16 3 N -0.28 -6.87 11.54 -48.18 -0.56 -7.43 16 4 N -0.31 -6.85 12.51 37.02 0.46 -6.39 16 5 S 0.53 8.21 19.06 -56.49 -1.08 7.14 16 6 C -0.32 -7.35 6.49 24.62 0.16 -7.19 16 7 C 0.59 16.65 7.65 86.59 0.66 17.31 16 8 O -0.55 -19.75 14.58 -4.08 -0.06 -19.81 16 9 N -0.60 -14.38 2.87 -850.97 -2.45 -16.82 16 10 C 0.05 0.72 9.08 127.77 1.16 1.88 16 11 C 0.12 3.76 5.51 86.38 0.48 4.24 16 12 C 0.14 5.70 6.58 86.38 0.57 6.27 16 13 N -0.74 -37.41 5.60 -343.45 -1.92 -39.34 16 14 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 15 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 17 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 18 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 2.07 6.66 -2.39 -0.02 2.06 16 25 H 0.10 0.78 7.99 -2.38 -0.02 0.76 16 26 H 0.11 1.28 8.02 -2.39 -0.02 1.26 16 27 H 0.07 0.79 4.58 -19.28 -0.09 0.70 16 28 H 0.11 2.79 8.07 -2.39 -0.02 2.77 16 29 H 0.07 2.46 7.40 -2.39 -0.02 2.44 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.38 19.85 7.67 -92.70 -0.71 19.14 16 33 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.82 296.84 2.40 -70.42 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.36 Total: 15.15 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.33 Total: 7.45 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -4.18 Total: -128.07 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.06 Total: -19.81 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.08 Total: 7.14 kcal Total: -72.82 2.40 -70.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691255805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.449 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds