Wall clock time and date at job start Mon Mar 30 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46639 * 2 1 4 4 C 1.52993 * 109.47223 * 120.00381 * 2 1 3 5 5 N 1.46509 * 109.46930 * 294.99994 * 4 2 1 6 6 C 1.36933 * 119.99797 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00300 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00111 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99776 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00513 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46856 * 60.00136 * 10 8 6 12 12 H 1.48499 * 109.47367 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47069 * 300.00505 * 10 8 6 14 14 C 1.52997 * 109.47085 * 240.00439 * 2 1 3 15 15 N 1.46497 * 109.47282 * 64.99603 * 14 2 1 16 16 C 1.34782 * 120.00148 * 179.97438 * 15 14 2 17 17 O 1.21622 * 119.99653 * 0.02562 * 16 15 14 18 18 C 1.47171 * 120.00184 * 180.02562 * 16 15 14 19 19 C 1.38241 * 128.47609 * 179.97438 * 18 16 15 20 20 N 1.31242 * 111.88701 * 179.73439 * 19 18 16 21 21 N 1.27337 * 120.04085 * 0.24773 * 20 19 18 22 22 S 1.56636 * 109.73928 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.46939 * 299.99866 * 1 2 3 24 24 H 1.09000 * 109.47237 * 59.99698 * 1 2 3 25 25 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47303 * 54.99558 * 4 2 1 27 27 H 1.08999 * 109.47582 * 175.00193 * 4 2 1 28 28 H 0.96997 * 120.00239 * 0.02562 * 5 4 2 29 29 H 0.97001 * 119.99903 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.46949 * 305.00276 * 14 2 1 31 31 H 1.09001 * 109.47287 * 184.99874 * 14 2 1 32 32 H 0.97005 * 119.99940 * 0.02562 * 15 14 2 33 33 H 1.08002 * 124.05835 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 0.0353 2.4424 6 6 2.0020 -0.4204 3.6854 7 1 2.5638 -1.3373 3.7863 8 6 1.6353 0.2967 4.8160 9 7 0.9511 1.4144 4.6931 10 14 2.1114 -0.3252 6.5118 11 1 3.5906 -0.4156 6.6086 12 1 1.6049 0.6146 7.5440 13 1 1.5180 -1.6687 6.7310 14 6 2.0401 -0.7211 -1.2493 15 7 1.6524 0.0355 -2.4423 16 6 1.9964 -0.4129 -3.6660 17 8 2.6283 -1.4459 -3.7796 18 6 1.6075 0.3475 -4.8645 19 6 1.8647 0.0536 -6.1906 20 7 1.3598 0.9561 -6.9986 21 7 0.7272 1.9541 -6.5239 22 16 0.6955 1.8654 -4.9604 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7198 1.2951 27 1 3.1264 -0.7995 1.2055 28 1 1.1483 0.8590 2.3518 29 1 0.6945 1.9153 5.4832 30 1 1.6054 -1.7197 -1.2953 31 1 3.1264 -0.7994 -1.2057 32 1 1.1488 0.8596 -2.3517 33 1 2.4112 -0.8170 -6.5222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698741835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:11 Heat of formation + Delta-G solvation = 17.559853 kcal Electronic energy + Delta-G solvation = -17514.857124 eV Core-core repulsion = 14509.556940 eV Total energy + Delta-G solvation = -3005.300184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92603 -40.73997 -38.24531 -36.03094 -34.25286 -33.17367 -31.86842 -29.01717 -27.66924 -26.93843 -24.69306 -23.42724 -21.89418 -21.22969 -20.27348 -19.24723 -18.41206 -17.35853 -17.08572 -16.64371 -16.41390 -15.90049 -15.55608 -15.45035 -15.31005 -14.75299 -14.16212 -13.83424 -13.64593 -13.54532 -13.01474 -12.93325 -12.76152 -12.20629 -12.17332 -11.98267 -11.74645 -11.63754 -11.48100 -11.22853 -11.19456 -10.93661 -10.90962 -10.24802 -8.96494 -7.93601 -5.21234 -1.37329 -0.25530 0.40651 0.86830 1.49563 1.51652 1.57720 1.82158 1.83064 2.58249 2.94999 3.40448 3.56445 3.64919 3.73013 3.98685 4.08886 4.37393 4.56251 4.57893 4.72664 4.78215 4.96682 5.06134 5.14176 5.20421 5.40341 5.50466 5.52613 6.22936 6.29734 6.55198 6.89399 7.36589 8.12644 8.36017 9.29609 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047357 B = 0.003056 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.106524 B = 9160.183080 C = 9600.940497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.742 5.742 6 C -0.246 4.246 7 H 0.074 0.926 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.970 3.030 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.279 1.279 14 C 0.137 3.863 15 N -0.704 5.704 16 C 0.604 3.396 17 O -0.553 6.553 18 C -0.302 4.302 19 C 0.078 3.922 20 N -0.276 5.276 21 N -0.288 5.288 22 S 0.504 5.496 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.377 0.623 29 H 0.251 0.749 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 0.295 -20.193 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.101 0.899 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.799 3.201 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.356 5.356 16 C 0.388 3.612 17 O -0.432 6.432 18 C -0.443 4.443 19 C -0.090 4.090 20 N -0.139 5.139 21 N -0.269 5.269 22 S 0.638 5.362 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.210 0.790 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.585 1.062 -20.741 20.828 hybrid contribution 0.605 -0.862 1.306 1.678 sum -0.979 0.200 -19.435 19.461 Atomic orbital electron populations 1.21775 0.93870 1.02168 1.01898 1.21368 0.97218 1.00326 0.92701 0.89950 1.20735 0.96690 0.94171 0.85508 1.42502 1.66798 1.27892 1.01325 1.19588 1.27812 1.05307 0.85116 0.90837 1.25504 1.01754 0.97908 1.01381 1.69787 1.45049 1.17842 1.29144 0.85261 0.77873 0.77156 0.79763 1.20539 1.22168 1.20523 1.21306 1.00386 0.95170 0.81816 1.45794 1.56880 1.28040 1.04886 1.16564 0.79114 0.83713 0.81768 1.90855 1.41082 1.24756 1.86459 1.27947 1.12516 1.04945 0.98901 1.24769 0.97757 0.99780 0.86696 1.70774 1.10454 0.99706 1.32970 1.78670 1.19423 1.19681 1.09161 1.82381 1.34814 1.11223 1.07736 0.93817 0.90443 0.92739 0.95918 0.96014 0.79035 0.93991 0.90659 0.90947 0.75051 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.94 71.98 0.64 -2.81 16 2 C -0.10 -2.52 2.46 -10.79 -0.03 -2.55 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.16 5.66 5.65 86.38 0.49 6.15 16 5 N -0.74 -35.59 5.33 -343.45 -1.83 -37.42 16 6 C -0.25 -13.38 9.99 84.03 0.84 -12.54 16 7 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 8 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 9 N -0.97 -57.47 13.06 21.65 0.28 -57.19 16 10 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.14 3.00 5.06 86.38 0.44 3.43 16 15 N -0.70 -12.40 5.28 -466.63 -2.46 -14.86 16 16 C 0.60 12.27 7.80 86.59 0.68 12.95 16 17 O -0.55 -15.23 16.98 -4.10 -0.07 -15.30 16 18 C -0.30 -4.88 6.81 24.62 0.17 -4.71 16 19 C 0.08 1.28 11.55 84.78 0.98 2.26 16 20 N -0.28 -5.43 11.54 -57.87 -0.67 -6.10 16 21 N -0.29 -5.36 12.51 37.02 0.46 -4.90 16 22 S 0.50 6.18 23.05 -56.49 -1.30 4.88 16 23 H 0.04 1.36 7.18 -2.39 -0.02 1.34 16 24 H 0.08 1.34 7.18 -2.39 -0.02 1.33 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.38 18.96 6.85 -92.71 -0.63 18.32 16 29 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 30 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.41 5.18 7.08 -92.70 -0.66 4.52 16 33 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -68.68 303.74 0.97 -67.71 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.14 Total: 17.43 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 4.67 Total: -1.45 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.22 Total: -120.47 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.07 Total: -15.30 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -1.30 Total: 4.88 kcal Total: -68.68 0.97 -67.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698741835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.271 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds