Wall clock time and date at job start Mon Mar 30 2020 01:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46769 * 2 1 4 4 C 1.53003 * 109.47161 * 240.00746 * 2 1 3 5 5 C 1.52995 * 109.47067 * 174.99749 * 4 2 1 6 6 N 1.46508 * 109.47009 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99876 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00055 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99651 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99897 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00235 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47354 * 90.00139 * 11 9 7 13 13 H 1.48508 * 109.47382 * 210.00310 * 11 9 7 14 14 H 1.48500 * 109.47149 * 330.00037 * 11 9 7 15 15 N 1.46494 * 109.47675 * 119.99995 * 2 1 3 16 16 C 1.34774 * 120.00570 * 275.00316 * 15 2 1 17 17 O 1.21602 * 119.99657 * 0.02562 * 16 15 2 18 18 C 1.47443 * 120.00215 * 179.97438 * 16 15 2 19 19 C 1.37982 * 124.15222 * 179.97438 * 18 16 15 20 20 S 1.72108 * 104.03410 * 179.97438 * 19 18 16 21 21 N 1.56410 * 96.15109 * 0.02562 * 20 19 18 22 22 N 1.27418 * 109.87634 * 359.97438 * 21 20 19 23 23 H 1.08995 * 109.47116 * 299.99447 * 1 2 3 24 24 H 1.08994 * 109.47457 * 59.99840 * 1 2 3 25 25 H 1.09004 * 109.46769 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46967 * 294.99425 * 4 2 1 27 27 H 1.08992 * 109.47186 * 54.99211 * 4 2 1 28 28 H 1.08994 * 109.47751 * 299.99432 * 5 4 2 29 29 H 1.09001 * 109.47536 * 59.99908 * 5 4 2 30 30 H 0.97001 * 120.00007 * 359.97438 * 6 5 4 31 31 H 0.97006 * 120.00406 * 179.97438 * 10 9 7 32 32 H 0.97006 * 119.99617 * 94.99702 * 15 2 1 33 33 H 1.07994 * 127.98739 * 359.94674 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 7 4.0532 -1.3041 -2.5098 7 6 5.3953 -1.3409 -2.7792 8 1 6.0938 -0.8609 -2.1097 9 6 5.8580 -1.9951 -3.9126 10 7 7.1480 -2.0310 -4.1713 11 14 4.6499 -2.8260 -5.0700 12 1 4.2148 -1.8586 -6.1092 13 1 5.3067 -3.9886 -5.7200 14 1 3.4679 -3.2914 -4.3011 15 7 2.0185 -0.6906 1.1961 16 6 2.1472 -0.0183 2.3571 17 8 1.8575 1.1614 2.4119 18 6 2.6383 -0.7136 3.5610 19 6 2.8032 -0.1102 4.7909 20 16 3.3890 -1.3746 5.8009 21 7 3.3875 -2.4841 4.6985 22 7 2.9762 -1.9977 3.5950 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7517 -1.7714 -1.2058 27 1 1.6053 -0.2616 -2.1370 28 1 3.8532 0.4371 -1.3574 29 1 3.9995 -1.0726 -0.4261 30 1 3.4259 -1.7361 -3.1104 31 1 7.4714 -2.4885 -4.9632 32 1 2.2491 -1.6318 1.1524 33 1 2.6097 0.9182 5.0580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:37 Heat of formation + Delta-G solvation = 43.679440 kcal Electronic energy + Delta-G solvation = -17904.854546 eV Core-core repulsion = 14900.686993 eV Total energy + Delta-G solvation = -3004.167553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31956 -39.53968 -36.71871 -34.53958 -32.63517 -31.83489 -30.83614 -28.30047 -27.35087 -24.56892 -23.60524 -21.44924 -21.10200 -20.72913 -19.52079 -17.60977 -16.90947 -16.43095 -16.24141 -15.65941 -14.89434 -14.47861 -14.29139 -14.07414 -13.70180 -13.36029 -12.89480 -12.66231 -12.60022 -12.38886 -12.06594 -11.53026 -11.25773 -10.91252 -10.76445 -10.64519 -10.52872 -10.36799 -10.29561 -10.21277 -10.13543 -9.57970 -9.16824 -8.87564 -7.22156 -5.75152 -3.10992 -0.23199 0.61854 1.21501 1.24332 2.95349 3.00800 3.38400 3.40754 3.46194 3.59499 4.40589 4.60276 4.61966 4.76856 5.04129 5.12084 5.22741 5.50446 5.59665 5.63213 5.76659 5.89205 5.92223 6.13302 6.18065 6.36687 6.71822 6.74519 7.12734 7.44391 7.97665 8.01116 8.43650 9.22759 9.94898 10.14621 11.43372 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.004129 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.392695 B = 6779.695935 C = 7619.101826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.697 5.697 16 C 0.605 3.395 17 O -0.529 6.529 18 C -0.020 4.020 19 C -0.237 4.237 20 S 0.455 5.545 21 N -0.286 5.286 22 N -0.207 5.207 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.361 0.639 31 H 0.259 0.741 32 H 0.412 0.588 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.841 3.261 20.329 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.348 5.348 16 C 0.386 3.614 17 O -0.405 6.405 18 C -0.168 4.168 19 C -0.394 4.394 20 S 0.591 5.409 21 N -0.267 5.267 22 N -0.077 5.077 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.193 0.807 31 H 0.069 0.931 32 H 0.249 0.751 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.187 2.472 21.067 24.977 hybrid contribution -1.057 0.111 -1.771 2.065 sum -14.244 2.584 19.296 24.122 Atomic orbital electron populations 1.22173 0.95021 1.02259 1.02554 1.21080 0.93848 0.97843 0.83213 0.88769 1.22129 0.98176 1.01015 0.96491 1.20632 0.90110 0.96045 0.90300 1.42705 1.05336 1.66073 1.26132 1.19064 0.82235 1.29409 1.06726 0.89318 1.24680 0.95622 1.00645 0.98256 1.69708 1.11742 1.48263 1.28570 0.86517 0.80882 0.79446 0.81489 1.21073 1.21723 1.20336 1.45988 1.65104 1.14889 1.08858 1.16615 0.77800 0.85583 0.81388 1.90828 1.50768 1.14484 1.84400 1.22743 1.06670 0.90332 0.97022 1.28879 1.04815 1.09060 0.96651 1.81538 1.44394 0.93933 1.21004 1.78699 1.21669 1.25747 1.00562 1.71548 1.10230 1.10343 1.15610 0.92223 0.91226 0.92348 0.91172 0.89970 0.95477 0.95491 0.80681 0.93065 0.75142 0.77445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.84 2.57 -67.93 -0.17 1.66 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 4 C -0.14 -2.01 4.87 -26.73 -0.13 -2.14 16 5 C 0.16 3.03 6.15 -4.04 -0.02 3.01 16 6 N -0.76 -18.27 5.41 -59.91 -0.32 -18.59 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.87 13.97 55.49 0.78 -29.09 16 11 Si 0.89 22.31 27.74 -169.99 -4.71 17.60 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 15 N -0.70 -9.03 4.53 -54.88 -0.25 -9.28 16 16 C 0.61 8.22 7.78 -12.51 -0.10 8.12 16 17 O -0.53 -8.20 16.46 5.28 0.09 -8.11 16 18 C -0.02 -0.24 6.87 -83.78 -0.58 -0.82 16 19 C -0.24 -2.03 11.21 30.64 0.34 -1.69 16 20 S 0.46 3.24 23.38 -107.50 -2.51 0.73 16 21 N -0.29 -3.32 12.49 60.35 0.75 -2.56 16 22 N -0.21 -2.68 11.24 32.74 0.37 -2.31 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 30 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.41 5.19 8.19 -40.82 -0.33 4.86 16 33 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -34.83 303.16 -5.71 -40.55 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.91 Total: 6.97 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.56 Total: -0.47 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 1.32 Total: -61.83 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.51 Total: 0.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.83 -5.71 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.226 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds