Wall clock time and date at job start Mon Mar 30 2020 01:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99638 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00259 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47209 * 89.99862 * 11 9 7 13 13 H 1.48502 * 109.47232 * 210.00145 * 11 9 7 14 14 H 1.48506 * 109.47263 * 330.00248 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21599 * 120.00344 * 0.02562 * 16 15 2 18 18 C 1.47457 * 119.99528 * 180.02562 * 16 15 2 19 19 C 1.37980 * 124.15141 * 179.72610 * 18 16 15 20 20 S 1.72101 * 104.03367 * 179.90024 * 19 18 16 21 21 N 1.56408 * 96.14932 * 0.32888 * 20 19 18 22 22 N 1.27413 * 109.88029 * 359.79633 * 21 20 19 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 27 27 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 28 28 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 29 29 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 30 30 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 31 31 H 0.97001 * 119.99760 * 179.97438 * 10 9 7 32 32 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 33 33 H 1.08005 * 127.98671 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 7.1477 -2.0298 4.1722 11 14 4.6497 -2.8256 5.0704 12 1 4.4444 -4.2334 4.6445 13 1 5.1914 -2.8007 6.4528 14 1 3.3526 -2.1034 5.0339 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8584 1.1617 -2.4116 18 6 2.6382 -0.7136 -3.5611 19 6 2.7975 -0.1116 -4.7924 20 16 3.3895 -1.3743 -5.8009 21 7 3.3875 -2.4839 -4.6986 22 7 2.9762 -1.9977 -3.5950 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4261 29 1 3.8531 0.4370 1.3574 30 1 3.4258 -1.7358 3.1107 31 1 7.4710 -2.4868 4.9645 32 1 2.2491 -1.6318 -1.1525 33 1 2.5979 0.9153 -5.0611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:40 Heat of formation + Delta-G solvation = 43.674759 kcal Electronic energy + Delta-G solvation = -17904.439961 eV Core-core repulsion = 14900.272204 eV Total energy + Delta-G solvation = -3004.167756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32027 -39.54028 -36.71868 -34.53990 -32.63504 -31.83469 -30.83649 -28.30021 -27.35076 -24.56828 -23.60499 -21.44915 -21.10193 -20.72945 -19.52108 -17.60964 -16.90966 -16.42927 -16.24416 -15.65884 -14.89372 -14.47903 -14.28922 -14.07494 -13.70605 -13.35643 -12.89495 -12.66463 -12.59863 -12.38723 -12.06692 -11.53894 -11.23830 -10.93135 -10.75801 -10.64505 -10.52674 -10.36809 -10.29590 -10.21251 -10.13482 -9.57987 -9.17019 -8.87412 -7.22156 -5.75180 -3.10989 -0.23143 0.61888 1.21592 1.24338 2.95392 3.00729 3.38352 3.40856 3.46186 3.59553 4.40614 4.60292 4.61942 4.76853 5.04108 5.12061 5.22594 5.50847 5.59964 5.62445 5.76791 5.89303 5.92105 6.13247 6.18050 6.36653 6.71813 6.74478 7.12768 7.44428 7.97680 8.01154 8.43677 9.22781 9.94908 10.14614 11.43361 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.004128 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.077214 B = 6780.539506 C = 7619.786326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.757 5.757 7 C -0.245 4.245 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.697 5.697 16 C 0.605 3.395 17 O -0.529 6.529 18 C -0.020 4.020 19 C -0.237 4.237 20 S 0.456 5.544 21 N -0.286 5.286 22 N -0.207 5.207 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.361 0.639 31 H 0.259 0.741 32 H 0.412 0.588 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 3.251 -20.334 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.348 5.348 16 C 0.386 3.614 17 O -0.405 6.405 18 C -0.168 4.168 19 C -0.394 4.394 20 S 0.591 5.409 21 N -0.267 5.267 22 N -0.077 5.077 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.193 0.807 31 H 0.069 0.931 32 H 0.249 0.751 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.190 2.467 -21.069 24.979 hybrid contribution -1.062 0.128 1.780 2.077 sum -14.252 2.595 -19.289 24.123 Atomic orbital electron populations 1.22174 0.95020 1.02260 1.02552 1.21081 0.93848 0.97844 0.83208 0.88775 1.22131 0.98181 1.01014 0.96487 1.20632 0.90108 0.96024 0.90318 1.42701 1.05308 1.66277 1.25953 1.19065 0.82182 1.29369 1.06822 0.89318 1.24682 0.95622 1.00674 0.98229 1.69709 1.11749 1.48235 1.28587 0.86517 0.80909 0.79826 0.81086 1.21058 1.21728 1.20334 1.45988 1.65109 1.14889 1.08854 1.16616 0.77794 0.85585 0.81390 1.90827 1.50788 1.14464 1.84398 1.22746 1.06673 0.90360 0.96991 1.28880 1.04810 1.09087 0.96644 1.81537 1.44231 0.94026 1.21066 1.78696 1.21681 1.25716 1.00585 1.71547 1.10266 1.10320 1.15595 0.92230 0.92341 0.91226 0.89982 0.91160 0.95436 0.95539 0.80682 0.93067 0.75139 0.77445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.84 2.57 -67.93 -0.17 1.66 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 4 C -0.14 -2.01 4.87 -26.73 -0.13 -2.14 16 5 C 0.16 3.03 6.15 -4.04 -0.02 3.01 16 6 N -0.76 -18.27 5.41 -59.90 -0.32 -18.59 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.87 13.97 55.49 0.78 -29.09 16 11 Si 0.89 22.31 27.73 -169.99 -4.71 17.60 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 15 N -0.70 -9.01 4.53 -54.87 -0.25 -9.26 16 16 C 0.61 8.22 7.78 -12.51 -0.10 8.12 16 17 O -0.53 -8.20 16.46 5.28 0.09 -8.11 16 18 C -0.02 -0.24 6.87 -83.78 -0.58 -0.82 16 19 C -0.24 -2.03 11.21 30.64 0.34 -1.69 16 20 S 0.46 3.24 23.38 -107.50 -2.51 0.73 16 21 N -0.29 -3.31 12.49 60.35 0.75 -2.56 16 22 N -0.21 -2.67 11.24 32.74 0.37 -2.30 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.55 7.75 -51.93 -0.40 0.15 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.41 5.17 8.19 -40.82 -0.33 4.84 16 33 H 0.21 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -34.83 303.16 -5.71 -40.55 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -3.91 Total: 6.95 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.56 Total: -0.47 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 1.32 Total: -61.81 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.51 Total: 0.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.83 -5.71 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.222 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds