Wall clock time and date at job start Mon Mar 30 2020 01:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99638 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00259 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47209 * 89.99862 * 11 9 7 13 13 H 1.48502 * 109.47232 * 210.00145 * 11 9 7 14 14 H 1.48506 * 109.47263 * 330.00248 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21599 * 120.00344 * 0.02562 * 16 15 2 18 18 C 1.47457 * 119.99528 * 180.02562 * 16 15 2 19 19 C 1.37980 * 124.15141 * 179.72610 * 18 16 15 20 20 S 1.72101 * 104.03367 * 179.90024 * 19 18 16 21 21 N 1.56408 * 96.14932 * 0.32888 * 20 19 18 22 22 N 1.27413 * 109.88029 * 359.79633 * 21 20 19 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 27 27 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 28 28 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 29 29 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 30 30 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 31 31 H 0.97001 * 119.99760 * 179.97438 * 10 9 7 32 32 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 33 33 H 1.08005 * 127.98671 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 7.1477 -2.0298 4.1722 11 14 4.6497 -2.8256 5.0704 12 1 4.4444 -4.2334 4.6445 13 1 5.1914 -2.8007 6.4528 14 1 3.3526 -2.1034 5.0339 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8584 1.1617 -2.4116 18 6 2.6382 -0.7136 -3.5611 19 6 2.7975 -0.1116 -4.7924 20 16 3.3895 -1.3743 -5.8009 21 7 3.3875 -2.4839 -4.6986 22 7 2.9762 -1.9977 -3.5950 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4261 29 1 3.8531 0.4370 1.3574 30 1 3.4258 -1.7358 3.1107 31 1 7.4710 -2.4868 4.9645 32 1 2.2491 -1.6318 -1.1525 33 1 2.5979 0.9153 -5.0611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699123090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:39 Heat of formation + Delta-G solvation = 16.353202 kcal Electronic energy + Delta-G solvation = -17905.624712 eV Core-core repulsion = 14900.272204 eV Total energy + Delta-G solvation = -3005.352508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16331 -40.54649 -38.00307 -36.25454 -33.87141 -33.32693 -32.15876 -29.75897 -28.13714 -25.87524 -25.02845 -23.13288 -22.09259 -21.75944 -20.45968 -19.66440 -17.82061 -17.42544 -17.10835 -16.68652 -16.38034 -16.00136 -15.59341 -15.42499 -15.08822 -14.78276 -14.34395 -13.91238 -13.66943 -13.35369 -13.12619 -12.97438 -12.90803 -12.40691 -12.24401 -12.01642 -11.84836 -11.76560 -11.48248 -11.25162 -11.17280 -10.99380 -10.91120 -10.19861 -9.32877 -8.04670 -5.39568 -0.94261 -0.04592 0.31331 0.53362 1.38005 1.43150 1.50434 1.98958 2.06122 2.48227 2.74687 3.26659 3.42170 3.63959 3.84526 3.99248 4.08585 4.24223 4.35618 4.52877 4.58808 4.74078 4.83414 4.97460 5.15096 5.23450 5.31680 5.45080 5.72180 6.18965 6.22271 6.53741 6.96890 7.05975 7.80421 8.02123 9.17120 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.004128 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.077214 B = 6780.539506 C = 7619.786326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.124 4.124 5 C 0.154 3.846 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.048 0.952 9 C -0.065 4.065 10 N -0.986 5.986 11 Si 0.963 3.037 12 H -0.276 1.276 13 H -0.295 1.295 14 H -0.245 1.245 15 N -0.698 5.698 16 C 0.604 3.396 17 O -0.555 6.555 18 C -0.048 4.048 19 C -0.236 4.236 20 S 0.563 5.437 21 N -0.335 5.335 22 N -0.237 5.237 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.369 0.631 31 H 0.259 0.741 32 H 0.414 0.586 33 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.214 2.964 -21.095 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.098 0.902 4 C -0.163 4.163 5 C 0.027 3.973 6 N -0.403 5.403 7 C -0.374 4.374 8 H 0.066 0.934 9 C -0.257 4.257 10 N -0.636 5.636 11 Si 0.789 3.211 12 H -0.202 1.202 13 H -0.222 1.222 14 H -0.170 1.170 15 N -0.348 5.348 16 C 0.386 3.614 17 O -0.433 6.433 18 C -0.196 4.196 19 C -0.392 4.392 20 S 0.698 5.302 21 N -0.316 5.316 22 N -0.106 5.106 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.203 0.797 31 H 0.068 0.932 32 H 0.250 0.750 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.599 2.179 -21.854 26.938 hybrid contribution -0.211 0.299 1.782 1.820 sum -15.810 2.478 -20.072 25.670 Atomic orbital electron populations 1.22095 0.92813 1.03146 1.03032 1.21034 0.95416 0.96737 0.82461 0.90197 1.22001 0.93947 1.02362 0.97940 1.20766 0.93819 0.94529 0.88140 1.42664 1.03493 1.66708 1.27470 1.19020 0.83974 1.28336 1.06035 0.93367 1.25614 0.97731 1.01907 1.00400 1.69908 1.14410 1.49781 1.29480 0.85301 0.79324 0.78862 0.77637 1.20199 1.22157 1.16962 1.46036 1.64933 1.14936 1.08937 1.16835 0.77276 0.85358 0.81943 1.90799 1.52134 1.15421 1.84951 1.22628 1.08631 0.90797 0.97506 1.29293 1.03254 1.10658 0.96043 1.81115 1.40696 0.90966 1.17439 1.78320 1.23202 1.28426 1.01620 1.71575 1.11388 1.10879 1.16739 0.92833 0.91224 0.89657 0.88513 0.89759 0.96301 0.96694 0.79709 0.93224 0.74966 0.75212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.48 71.98 0.68 -2.23 16 2 C 0.15 3.59 2.57 44.99 0.12 3.70 16 3 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 4 C -0.12 -3.33 4.87 30.59 0.15 -3.18 16 5 C 0.15 5.93 6.15 86.38 0.53 6.46 16 6 N -0.76 -35.99 5.41 -343.44 -1.86 -37.85 16 7 C -0.24 -14.37 10.47 84.03 0.88 -13.49 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 10 N -0.99 -64.54 13.97 21.65 0.30 -64.24 16 11 Si 0.96 45.54 27.73 68.60 1.90 47.45 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 15 N -0.70 -17.80 4.53 -445.77 -2.02 -19.82 16 16 C 0.60 16.35 7.78 86.67 0.67 17.02 16 17 O -0.56 -17.15 16.46 -4.03 -0.07 -17.22 16 18 C -0.05 -1.12 6.87 41.36 0.28 -0.83 16 19 C -0.24 -3.64 11.21 67.76 0.76 -2.88 16 20 S 0.56 6.72 23.38 -56.49 -1.32 5.40 16 21 N -0.33 -7.47 12.49 37.02 0.46 -7.01 16 22 N -0.24 -6.08 11.24 -50.34 -0.57 -6.65 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.02 0.77 7.75 -2.39 -0.02 0.75 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.37 16.20 5.53 -92.71 -0.51 15.69 16 31 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.41 10.31 8.19 -92.71 -0.76 9.55 16 33 H 0.23 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -77.52 303.16 1.20 -76.32 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.18 Total: 22.49 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 4.54 Total: 1.12 kcal Atomic # 7 Polarization: -131.89 SS G_CDS: -3.68 Total: -135.56 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.07 Total: -17.22 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.32 Total: 5.40 kcal Total: -77.52 1.20 -76.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.674 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds