Wall clock time and date at job start Mon Mar 30 2020 01:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.53004 * 109.46857 * 119.99904 * 2 1 3 5 5 N 1.46494 * 109.46770 * 174.99889 * 4 2 1 6 6 C 1.46498 * 120.00433 * 269.99735 * 5 4 2 7 7 C 1.36944 * 119.99945 * 90.00310 * 5 4 2 8 8 H 1.07996 * 119.99720 * 336.79598 * 7 5 4 9 9 C 1.38814 * 119.99899 * 157.06847 * 7 5 4 10 10 N 1.31618 * 119.99792 * 156.21317 * 9 7 5 11 11 Si 1.86795 * 120.00174 * 336.21978 * 9 7 5 12 12 H 1.48493 * 109.47516 * 84.92056 * 11 9 7 13 13 H 1.48505 * 109.47108 * 204.92258 * 11 9 7 14 14 H 1.48498 * 109.46928 * 324.92024 * 11 9 7 15 15 N 1.46498 * 109.46828 * 239.99770 * 2 1 3 16 16 C 1.34773 * 119.99752 * 85.00763 * 15 2 1 17 17 O 1.21559 * 120.00352 * 359.97438 * 16 15 2 18 18 C 1.47751 * 119.99831 * 179.97438 * 16 15 2 19 19 C 1.39357 * 124.11770 * 179.97438 * 18 16 15 20 20 N 1.30083 * 112.14461 * 179.97438 * 19 18 16 21 21 S 1.55918 * 108.75776 * 359.97438 * 20 19 18 22 22 N 1.31486 * 124.11889 * 359.69119 * 18 16 15 23 23 H 1.08990 * 109.46936 * 60.00069 * 1 2 3 24 24 H 1.08999 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47251 * 300.00018 * 1 2 3 26 26 H 1.08998 * 109.47164 * 54.99751 * 4 2 1 27 27 H 1.09001 * 109.46857 * 294.99928 * 4 2 1 28 28 H 1.09005 * 109.47454 * 273.90024 * 6 5 4 29 29 H 1.08998 * 109.46806 * 33.89494 * 6 5 4 30 30 H 1.09000 * 109.47786 * 153.89364 * 6 5 4 31 31 H 0.96993 * 120.00121 * 180.02562 * 10 9 7 32 32 H 0.97002 * 119.99932 * 264.99533 * 15 2 1 33 33 H 1.07998 * 123.92317 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2799 0.1648 1.7241 8 1 3.8803 1.1611 1.8432 9 6 5.5858 -0.1096 2.1065 10 7 6.4710 0.8624 2.1698 11 14 6.0869 -1.8582 2.5310 12 1 6.4472 -2.5857 1.2876 13 1 7.2573 -1.8298 3.4447 14 1 4.9546 -2.5494 3.1984 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3570 17 8 1.8578 1.1611 -2.4118 18 6 2.6401 -0.7147 -3.5633 19 6 2.8055 -0.1047 -4.8053 20 7 3.2529 -0.9332 -5.7028 21 16 3.4434 -2.3328 -5.0426 22 7 2.9812 -1.9842 -3.5944 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -1.7198 1.2952 27 1 1.7516 -0.1583 2.1370 28 1 4.2191 -2.7940 1.2936 29 1 3.5091 -2.3302 -0.2713 30 1 5.1149 -1.7190 0.1934 31 1 7.3836 0.6707 2.4367 32 1 2.2491 -1.6318 -1.1525 33 1 2.5876 0.9350 -5.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699436290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:48 Heat of formation + Delta-G solvation = 55.313820 kcal Electronic energy + Delta-G solvation = -18837.662357 eV Core-core repulsion = 15833.999308 eV Total energy + Delta-G solvation = -3003.663049 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09913 -39.03566 -36.66301 -34.34800 -33.66868 -31.52209 -30.70653 -27.39979 -26.79397 -25.72364 -23.57327 -21.80539 -20.42835 -20.14864 -19.39314 -17.61370 -16.90244 -16.08814 -15.73943 -15.30553 -15.22190 -14.52397 -14.27434 -13.87055 -13.28878 -12.90324 -12.49166 -12.37928 -12.28152 -12.08486 -11.68749 -11.51186 -11.32758 -11.25232 -11.11934 -10.80553 -10.55215 -10.23824 -10.08539 -9.86738 -9.52308 -9.28954 -8.84717 -8.51758 -7.05663 -5.96515 -3.30279 0.36207 1.30383 1.53387 1.54994 3.25426 3.32430 3.39253 3.47751 3.50175 4.44733 4.53053 4.84034 4.94384 5.06768 5.33113 5.39222 5.44454 5.66093 5.72392 5.92398 5.99496 6.17232 6.28867 6.31064 6.36441 6.44635 6.64097 6.69579 6.87313 7.76188 7.90003 8.29535 8.38052 8.91092 9.70895 10.00843 11.19253 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.006320 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.702107 B = 4429.002219 C = 5171.280389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.094 0.906 4 C 0.143 3.857 5 N -0.607 5.607 6 C 0.106 3.894 7 C -0.265 4.265 8 H 0.087 0.913 9 C 0.025 3.975 10 N -0.903 5.903 11 Si 0.887 3.113 12 H -0.288 1.288 13 H -0.305 1.305 14 H -0.278 1.278 15 N -0.683 5.683 16 C 0.601 3.399 17 O -0.529 6.529 18 C 0.021 3.979 19 C 0.089 3.911 20 N -0.579 5.579 21 S 0.703 5.297 22 N -0.544 5.544 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.009 0.991 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.262 0.738 32 H 0.404 0.596 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 -7.770 -12.272 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.112 0.888 4 C 0.015 3.985 5 N -0.330 5.330 6 C -0.039 4.039 7 C -0.393 4.393 8 H 0.105 0.895 9 C -0.174 4.174 10 N -0.546 5.546 11 Si 0.718 3.282 12 H -0.216 1.216 13 H -0.234 1.234 14 H -0.204 1.204 15 N -0.334 5.334 16 C 0.380 3.620 17 O -0.405 6.405 18 C -0.155 4.155 19 C -0.105 4.105 20 N -0.420 5.420 21 S 0.744 5.256 22 N -0.393 5.393 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.026 0.974 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.241 0.759 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.234 -8.687 -13.066 18.206 hybrid contribution 0.095 0.147 0.954 0.970 sum -9.139 -8.541 -12.112 17.412 Atomic orbital electron populations 1.22134 0.95919 1.01514 1.02249 1.22011 0.92566 0.99332 0.85146 0.88841 1.21120 0.84670 0.97977 0.94732 1.44095 1.00487 1.22320 1.66064 1.21442 0.98268 0.89574 0.94626 1.18880 0.94116 0.89897 1.36377 0.89503 1.25165 0.95965 0.96803 0.99496 1.69890 1.02939 1.32063 1.49676 0.87019 0.76935 0.86473 0.77811 1.21571 1.23357 1.20437 1.45918 1.64451 1.14329 1.08675 1.16720 0.78169 0.85605 0.81466 1.90803 1.51007 1.14428 1.84261 1.22726 1.05709 0.88639 0.98388 1.23790 0.97514 1.02622 0.86600 1.72254 1.22775 1.09258 1.37713 1.78990 1.44315 1.13128 0.89130 1.72480 1.19083 1.19343 1.28432 0.92582 0.92941 0.91468 0.93749 0.90673 0.97364 0.95267 0.92179 0.92788 0.75862 0.76946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.16 0.35 -1.76 16 2 C 0.12 1.95 2.88 -67.92 -0.20 1.75 16 3 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 4 C 0.14 2.57 5.32 -4.04 -0.02 2.55 16 5 N -0.61 -13.85 2.59 -181.12 -0.47 -14.32 16 6 C 0.11 2.27 8.00 59.85 0.48 2.75 16 7 C -0.26 -7.28 10.04 -15.06 -0.15 -7.43 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.02 0.72 5.17 -17.43 -0.09 0.63 16 10 N -0.90 -27.79 13.97 55.49 0.78 -27.01 16 11 Si 0.89 22.44 24.04 -169.99 -4.09 18.36 16 12 H -0.29 -7.02 6.37 56.52 0.36 -6.66 16 13 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 14 H -0.28 -6.94 6.90 56.52 0.39 -6.55 16 15 N -0.68 -11.30 4.51 -54.78 -0.25 -11.55 16 16 C 0.60 10.26 7.79 -12.37 -0.10 10.17 16 17 O -0.53 -10.21 16.47 5.31 0.09 -10.12 16 18 C 0.02 0.31 6.81 -83.71 -0.57 -0.26 16 19 C 0.09 1.14 11.22 -17.88 -0.20 0.94 16 20 N -0.58 -7.09 11.41 19.42 0.22 -6.87 16 21 S 0.70 7.27 23.69 -107.50 -2.55 4.72 16 22 N -0.54 -7.32 11.00 23.17 0.25 -7.07 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 27 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 28 H 0.01 0.18 5.75 -51.93 -0.30 -0.11 16 29 H 0.03 0.52 5.55 -51.93 -0.29 0.24 16 30 H 0.06 1.42 5.79 -51.93 -0.30 1.12 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.40 6.36 5.69 -40.82 -0.23 6.12 16 33 H 0.21 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -32.70 290.07 -5.78 -38.49 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.65 Total: 1.68 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.49 Total: 9.33 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 0.54 Total: -66.82 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.09 Total: 18.36 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -2.55 Total: 4.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.70 -5.78 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699436290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.799 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds