Wall clock time and date at job start Mon Mar 30 2020 01:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.53004 * 109.46857 * 119.99904 * 2 1 3 5 5 N 1.46494 * 109.46770 * 174.99889 * 4 2 1 6 6 C 1.46498 * 120.00433 * 269.99735 * 5 4 2 7 7 C 1.36944 * 119.99945 * 90.00310 * 5 4 2 8 8 H 1.07996 * 119.99720 * 336.79598 * 7 5 4 9 9 C 1.38814 * 119.99899 * 157.06847 * 7 5 4 10 10 N 1.31618 * 119.99792 * 156.21317 * 9 7 5 11 11 Si 1.86795 * 120.00174 * 336.21978 * 9 7 5 12 12 H 1.48493 * 109.47516 * 84.92056 * 11 9 7 13 13 H 1.48505 * 109.47108 * 204.92258 * 11 9 7 14 14 H 1.48498 * 109.46928 * 324.92024 * 11 9 7 15 15 N 1.46498 * 109.46828 * 239.99770 * 2 1 3 16 16 C 1.34773 * 119.99752 * 85.00763 * 15 2 1 17 17 O 1.21559 * 120.00352 * 359.97438 * 16 15 2 18 18 C 1.47751 * 119.99831 * 179.97438 * 16 15 2 19 19 C 1.39357 * 124.11770 * 179.97438 * 18 16 15 20 20 N 1.30083 * 112.14461 * 179.97438 * 19 18 16 21 21 S 1.55918 * 108.75776 * 359.97438 * 20 19 18 22 22 N 1.31486 * 124.11889 * 359.69119 * 18 16 15 23 23 H 1.08990 * 109.46936 * 60.00069 * 1 2 3 24 24 H 1.08999 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47251 * 300.00018 * 1 2 3 26 26 H 1.08998 * 109.47164 * 54.99751 * 4 2 1 27 27 H 1.09001 * 109.46857 * 294.99928 * 4 2 1 28 28 H 1.09005 * 109.47454 * 273.90024 * 6 5 4 29 29 H 1.08998 * 109.46806 * 33.89494 * 6 5 4 30 30 H 1.09000 * 109.47786 * 153.89364 * 6 5 4 31 31 H 0.96993 * 120.00121 * 180.02562 * 10 9 7 32 32 H 0.97002 * 119.99932 * 264.99533 * 15 2 1 33 33 H 1.07998 * 123.92317 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2799 0.1648 1.7241 8 1 3.8803 1.1611 1.8432 9 6 5.5858 -0.1096 2.1065 10 7 6.4710 0.8624 2.1698 11 14 6.0869 -1.8582 2.5310 12 1 6.4472 -2.5857 1.2876 13 1 7.2573 -1.8298 3.4447 14 1 4.9546 -2.5494 3.1984 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3570 17 8 1.8578 1.1611 -2.4118 18 6 2.6401 -0.7147 -3.5633 19 6 2.8055 -0.1047 -4.8053 20 7 3.2529 -0.9332 -5.7028 21 16 3.4434 -2.3328 -5.0426 22 7 2.9812 -1.9842 -3.5944 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -1.7198 1.2952 27 1 1.7516 -0.1583 2.1370 28 1 4.2191 -2.7940 1.2936 29 1 3.5091 -2.3302 -0.2713 30 1 5.1149 -1.7190 0.1934 31 1 7.3836 0.6707 2.4367 32 1 2.2491 -1.6318 -1.1525 33 1 2.5876 0.9350 -5.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699436290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:48 Heat of formation + Delta-G solvation = 29.758394 kcal Electronic energy + Delta-G solvation = -18838.770524 eV Core-core repulsion = 15833.999308 eV Total energy + Delta-G solvation = -3004.771215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16047 -40.32475 -38.26136 -35.93930 -34.74069 -33.50971 -32.08656 -28.53332 -28.25949 -27.62052 -24.77031 -23.41400 -21.83922 -21.43476 -20.35246 -19.02020 -18.72409 -17.29081 -17.19675 -16.91429 -16.38834 -16.17219 -15.63333 -15.25524 -14.86145 -14.68523 -14.28809 -13.78361 -13.69972 -13.32128 -13.05209 -12.80973 -12.54119 -12.39631 -12.27488 -12.22835 -12.10832 -12.09458 -11.85798 -11.54826 -11.17072 -10.74118 -10.29015 -10.00430 -8.97675 -8.16286 -5.45749 -0.65476 0.34099 0.46486 0.64272 1.32079 1.42358 1.51377 2.00575 2.16519 2.43232 3.02894 3.35817 3.42433 3.71003 4.03429 4.06313 4.31811 4.41985 4.45794 4.50768 4.65956 4.74784 4.81822 4.95072 5.03237 5.14720 5.32004 5.37267 5.54972 5.84183 6.12396 6.47077 6.90534 7.09139 7.63601 7.95692 9.03648 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.006320 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.702107 B = 4429.002219 C = 5171.280389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 H 0.051 0.949 4 C 0.140 3.860 5 N -0.619 5.619 6 C 0.105 3.895 7 C -0.249 4.249 8 H 0.050 0.950 9 C -0.038 4.038 10 N -0.957 5.957 11 Si 0.953 3.047 12 H -0.271 1.271 13 H -0.316 1.316 14 H -0.265 1.265 15 N -0.682 5.682 16 C 0.597 3.403 17 O -0.562 6.562 18 C -0.004 4.004 19 C 0.086 3.914 20 N -0.597 5.597 21 S 0.798 5.202 22 N -0.565 5.565 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.409 0.591 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 -10.818 -13.317 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.070 0.930 4 C 0.014 3.986 5 N -0.342 5.342 6 C -0.039 4.039 7 C -0.378 4.378 8 H 0.068 0.932 9 C -0.233 4.233 10 N -0.603 5.603 11 Si 0.782 3.218 12 H -0.198 1.198 13 H -0.245 1.245 14 H -0.190 1.190 15 N -0.333 5.333 16 C 0.378 3.622 17 O -0.441 6.441 18 C -0.177 4.177 19 C -0.105 4.105 20 N -0.439 5.439 21 S 0.839 5.161 22 N -0.417 5.417 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.248 0.752 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.406 -11.756 -14.121 21.116 hybrid contribution 0.406 1.044 1.139 1.597 sum -10.000 -10.712 -12.982 19.578 Atomic orbital electron populations 1.22022 0.92767 1.03178 1.02596 1.21795 0.94895 0.96851 0.84915 0.93022 1.21355 0.81895 1.00143 0.95184 1.44186 1.02198 1.21779 1.66055 1.21467 0.97680 0.88928 0.95870 1.18803 0.94404 0.89780 1.34831 0.93197 1.25829 0.96182 1.00771 1.00472 1.70034 1.03328 1.34549 1.52387 0.85943 0.76388 0.81679 0.77800 1.19760 1.24510 1.19049 1.45884 1.64472 1.14446 1.08503 1.17045 0.77570 0.85361 0.82242 1.90776 1.52464 1.15883 1.84989 1.22305 1.08133 0.89267 0.97975 1.23801 0.97437 1.03174 0.86122 1.72147 1.23234 1.10358 1.38159 1.78640 1.40314 1.10799 0.86301 1.72227 1.19489 1.18980 1.30980 0.93348 0.90511 0.90070 0.89970 0.90767 0.96393 0.91621 0.94793 0.93132 0.75240 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.48 71.99 0.68 -2.93 16 2 C 0.12 4.01 2.88 45.00 0.13 4.13 16 3 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 4 C 0.14 4.79 5.32 86.38 0.46 5.25 16 5 N -0.62 -27.56 2.59 -726.94 -1.88 -29.44 16 6 C 0.11 4.23 8.00 127.77 1.02 5.25 16 7 C -0.25 -13.93 10.04 84.03 0.84 -13.08 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 C -0.04 -2.22 5.17 84.86 0.44 -1.78 16 10 N -0.96 -60.88 13.97 21.65 0.30 -60.58 16 11 Si 0.95 46.26 24.04 68.60 1.65 47.90 16 12 H -0.27 -12.32 6.37 99.48 0.63 -11.68 16 13 H -0.32 -15.78 7.11 99.48 0.71 -15.08 16 14 H -0.27 -12.20 6.90 99.48 0.69 -11.51 16 15 N -0.68 -21.80 4.51 -445.49 -2.01 -23.81 16 16 C 0.60 20.30 7.79 86.76 0.68 20.97 16 17 O -0.56 -22.29 16.47 -3.90 -0.06 -22.36 16 18 C 0.00 -0.11 6.81 41.98 0.29 0.17 16 19 C 0.09 2.13 11.22 85.22 0.96 3.08 16 20 N -0.60 -13.30 11.41 -92.48 -1.06 -14.35 16 21 S 0.80 14.06 23.69 -56.49 -1.34 12.73 16 22 N -0.56 -13.85 11.00 -80.59 -0.89 -14.74 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 27 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 28 H 0.02 0.71 5.75 -2.38 -0.01 0.70 16 29 H 0.07 2.14 5.55 -2.39 -0.01 2.13 16 30 H 0.03 1.54 5.79 -2.39 -0.01 1.52 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 32 H 0.41 11.89 5.69 -92.71 -0.53 11.36 16 33 H 0.22 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -72.62 290.07 0.74 -71.88 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.53 Total: 11.70 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 5.49 Total: 21.06 kcal Atomic # 7 Polarization: -137.39 SS G_CDS: -5.53 Total: -142.92 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.65 Total: 47.90 kcal Atomic # 16 Polarization: 14.06 SS G_CDS: -1.34 Total: 12.73 kcal Total: -72.62 0.74 -71.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699436290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.642 kcal (2) G-P(sol) polarization free energy of solvation -72.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds