Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46450 * 2 1 4 4 C 1.52991 * 109.47468 * 119.99760 * 2 1 3 5 5 C 1.53000 * 109.47341 * 185.00125 * 4 2 1 6 6 N 1.46500 * 109.47218 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99798 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00371 * 0.02562 * 7 6 5 9 9 C 1.47448 * 119.99642 * 180.02562 * 7 6 5 10 10 C 1.37985 * 124.15314 * 179.97438 * 9 7 6 11 11 S 1.72095 * 104.03416 * 179.97438 * 10 9 7 12 12 N 1.56400 * 96.15548 * 0.02562 * 11 10 9 13 13 N 1.27417 * 109.87496 * 0.02562 * 12 11 10 14 14 N 1.46493 * 109.47300 * 240.00479 * 2 1 3 15 15 C 1.36937 * 120.00166 * 84.99479 * 14 2 1 16 16 H 1.08001 * 120.00180 * 0.02562 * 15 14 2 17 17 C 1.38818 * 119.99979 * 180.02562 * 15 14 2 18 18 N 1.31617 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46990 * 90.00068 * 19 17 15 21 21 H 1.48504 * 109.47151 * 209.99513 * 19 17 15 22 22 H 1.48501 * 109.47642 * 329.99988 * 19 17 15 23 23 H 1.08990 * 109.47300 * 60.00221 * 1 2 3 24 24 H 1.09000 * 109.46450 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46927 * 299.99495 * 1 2 3 26 26 H 1.09000 * 109.46852 * 65.00519 * 4 2 1 27 27 H 1.08994 * 109.47487 * 305.00417 * 4 2 1 28 28 H 1.09000 * 109.46825 * 60.00378 * 5 4 2 29 29 H 1.08996 * 109.47568 * 300.00418 * 5 4 2 30 30 H 0.97000 * 120.00265 * 0.02562 * 6 5 4 31 31 H 1.08001 * 127.98064 * 359.69824 * 10 9 7 32 32 H 0.97004 * 119.99945 * 264.99569 * 14 2 1 33 33 H 0.96992 * 120.00587 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5649 -0.6131 1.3136 6 7 4.0533 -1.3042 2.5095 7 6 5.3743 -1.3396 2.7750 8 8 6.1606 -0.7975 2.0223 9 6 5.8659 -2.0356 3.9783 10 6 7.1966 -2.1251 4.3321 11 16 7.1793 -3.0305 5.7956 12 7 5.6281 -3.2198 5.8574 13 7 5.0823 -2.6543 4.8545 14 7 2.0184 -0.6905 -1.1962 15 6 2.1491 -0.0073 -2.3757 16 1 1.8925 1.0407 -2.4241 17 6 2.6114 -0.6618 -3.5093 18 7 2.9245 -1.9388 -3.4503 19 14 2.7890 0.2700 -5.1185 20 1 4.1512 0.8552 -5.2039 21 1 2.5782 -0.6614 -6.2558 22 1 1.7789 1.3571 -5.1753 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.7518 -1.7714 1.2055 27 1 1.6055 -0.2617 2.1369 28 1 3.8532 0.4372 1.3573 29 1 3.9996 -1.0726 0.4259 30 1 3.4261 -1.7363 3.1101 31 1 8.0519 -1.7239 3.8088 32 1 2.2491 -1.6317 -1.1526 33 1 3.2471 -2.3962 -4.2424 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700325615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = 39.394097 kcal Electronic energy + Delta-G solvation = -17747.370881 eV Core-core repulsion = 14743.017501 eV Total energy + Delta-G solvation = -3004.353380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27594 -39.21049 -36.60760 -34.46084 -32.50072 -32.14346 -29.42199 -28.22755 -27.19858 -24.48303 -23.55162 -22.09436 -21.00109 -20.06092 -19.08398 -17.22997 -16.94229 -16.27925 -15.95014 -15.44156 -15.23550 -14.64680 -14.01310 -13.89549 -13.48164 -12.98561 -12.88616 -12.49031 -12.37948 -12.02268 -11.53976 -11.10426 -10.92270 -10.76583 -10.67314 -10.60628 -10.34682 -10.33346 -10.20572 -10.16099 -9.88142 -9.61959 -8.95005 -8.85567 -6.93362 -5.73101 -3.01855 -0.22327 0.62532 1.23931 1.25268 3.08452 3.13128 3.46795 3.51838 3.53178 3.64188 4.44156 4.62679 4.73351 5.09549 5.29491 5.40980 5.58131 5.69450 5.87981 6.08369 6.18389 6.32864 6.39329 6.44030 6.61540 6.70550 6.88174 7.08318 7.15914 7.55466 7.73941 8.12982 8.45212 9.56610 10.13326 10.47952 11.49560 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.003572 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.282983 B = 7837.358832 C = 8473.613229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.120 3.880 6 N -0.705 5.705 7 C 0.597 3.403 8 O -0.521 6.521 9 C -0.017 4.017 10 C -0.235 4.235 11 S 0.454 5.546 12 N -0.291 5.291 13 N -0.211 5.211 14 N -0.724 5.724 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.209 0.791 32 H 0.383 0.617 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -1.376 20.283 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.002 4.002 6 N -0.356 5.356 7 C 0.377 3.623 8 O -0.396 6.396 9 C -0.165 4.165 10 C -0.392 4.392 11 S 0.590 5.410 12 N -0.271 5.271 13 N -0.082 5.082 14 N -0.366 5.366 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.208 1.208 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.226 0.774 32 H 0.217 0.783 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.051 -1.853 21.111 22.334 hybrid contribution -0.018 0.719 -2.021 2.145 sum 7.033 -1.135 19.090 20.376 Atomic orbital electron populations 1.22420 0.99071 1.00891 0.99984 1.20147 0.91932 0.95556 0.85928 0.93226 1.22076 0.93550 1.02092 0.99513 1.21595 0.94809 0.97250 0.86545 1.45983 1.06463 1.55583 1.27534 1.16645 0.83237 0.79932 0.82503 1.90880 1.55536 1.45490 1.47688 1.22835 0.90161 1.03947 0.99525 1.28905 1.01915 1.05024 1.03386 1.81501 1.10905 1.34848 1.13790 1.78655 1.06520 1.22596 1.19377 1.71522 1.30750 1.07447 0.98433 1.42467 1.78100 1.10678 1.05382 1.19226 1.36507 0.93835 0.87343 0.91191 1.24723 1.02181 0.95935 0.98031 1.69651 1.50944 1.08654 1.28861 0.86222 0.77803 0.78585 0.83767 1.21722 1.21873 1.20820 0.92711 0.93486 0.94525 0.91387 0.91698 0.91303 0.89243 0.75836 0.77370 0.78272 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.34 2.89 -67.94 -0.20 3.14 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.06 4.87 -26.74 -0.13 -2.19 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.97 16 6 N -0.71 -10.16 5.55 -61.38 -0.34 -10.50 16 7 C 0.60 9.17 7.81 -12.51 -0.10 9.07 16 8 O -0.52 -9.71 16.80 5.28 0.09 -9.62 16 9 C -0.02 -0.22 6.87 -83.78 -0.58 -0.79 16 10 C -0.24 -2.16 11.21 30.64 0.34 -1.81 16 11 S 0.45 3.18 23.38 -107.50 -2.51 0.66 16 12 N -0.29 -3.19 12.49 60.35 0.75 -2.43 16 13 N -0.21 -2.63 11.24 32.74 0.37 -2.26 16 14 N -0.72 -17.70 4.57 -53.43 -0.24 -17.95 16 15 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 19 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 30 H 0.41 5.01 8.06 -40.82 -0.33 4.68 16 31 H 0.21 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.38 10.01 7.80 -40.82 -0.32 9.70 16 33 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -32.93 306.82 -6.11 -39.04 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.97 Total: 8.71 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.57 Total: -0.29 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 1.26 Total: -60.69 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.51 Total: 0.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.93 -6.11 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700325615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.432 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds