Wall clock time and date at job start Mon Mar 30 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46450 * 2 1 4 4 C 1.52991 * 109.47468 * 119.99760 * 2 1 3 5 5 C 1.53000 * 109.47341 * 185.00125 * 4 2 1 6 6 N 1.46500 * 109.47218 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99798 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00371 * 0.02562 * 7 6 5 9 9 C 1.47448 * 119.99642 * 180.02562 * 7 6 5 10 10 C 1.37985 * 124.15314 * 179.97438 * 9 7 6 11 11 S 1.72095 * 104.03416 * 179.97438 * 10 9 7 12 12 N 1.56400 * 96.15548 * 0.02562 * 11 10 9 13 13 N 1.27417 * 109.87496 * 0.02562 * 12 11 10 14 14 N 1.46493 * 109.47300 * 240.00479 * 2 1 3 15 15 C 1.36937 * 120.00166 * 84.99479 * 14 2 1 16 16 H 1.08001 * 120.00180 * 0.02562 * 15 14 2 17 17 C 1.38818 * 119.99979 * 180.02562 * 15 14 2 18 18 N 1.31617 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46990 * 90.00068 * 19 17 15 21 21 H 1.48504 * 109.47151 * 209.99513 * 19 17 15 22 22 H 1.48501 * 109.47642 * 329.99988 * 19 17 15 23 23 H 1.08990 * 109.47300 * 60.00221 * 1 2 3 24 24 H 1.09000 * 109.46450 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46927 * 299.99495 * 1 2 3 26 26 H 1.09000 * 109.46852 * 65.00519 * 4 2 1 27 27 H 1.08994 * 109.47487 * 305.00417 * 4 2 1 28 28 H 1.09000 * 109.46825 * 60.00378 * 5 4 2 29 29 H 1.08996 * 109.47568 * 300.00418 * 5 4 2 30 30 H 0.97000 * 120.00265 * 0.02562 * 6 5 4 31 31 H 1.08001 * 127.98064 * 359.69824 * 10 9 7 32 32 H 0.97004 * 119.99945 * 264.99569 * 14 2 1 33 33 H 0.96992 * 120.00587 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5649 -0.6131 1.3136 6 7 4.0533 -1.3042 2.5095 7 6 5.3743 -1.3396 2.7750 8 8 6.1606 -0.7975 2.0223 9 6 5.8659 -2.0356 3.9783 10 6 7.1966 -2.1251 4.3321 11 16 7.1793 -3.0305 5.7956 12 7 5.6281 -3.2198 5.8574 13 7 5.0823 -2.6543 4.8545 14 7 2.0184 -0.6905 -1.1962 15 6 2.1491 -0.0073 -2.3757 16 1 1.8925 1.0407 -2.4241 17 6 2.6114 -0.6618 -3.5093 18 7 2.9245 -1.9388 -3.4503 19 14 2.7890 0.2700 -5.1185 20 1 4.1512 0.8552 -5.2039 21 1 2.5782 -0.6614 -6.2558 22 1 1.7789 1.3571 -5.1753 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.7518 -1.7714 1.2055 27 1 1.6055 -0.2617 2.1369 28 1 3.8532 0.4372 1.3573 29 1 3.9996 -1.0726 0.4259 30 1 3.4261 -1.7363 3.1101 31 1 8.0519 -1.7239 3.8088 32 1 2.2491 -1.6317 -1.1526 33 1 3.2471 -2.3962 -4.2424 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700325615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:51 Heat of formation + Delta-G solvation = 13.929430 kcal Electronic energy + Delta-G solvation = -17748.475111 eV Core-core repulsion = 14743.017501 eV Total energy + Delta-G solvation = -3005.457611 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15497 -40.39079 -38.15937 -35.94460 -34.17167 -33.23923 -31.09741 -29.73264 -28.06616 -25.98966 -25.21348 -23.34408 -22.00808 -21.44653 -20.24126 -19.21439 -17.87914 -17.25309 -17.10954 -16.80607 -16.34542 -16.19356 -15.56447 -15.33938 -15.13202 -14.49809 -14.13207 -13.69392 -13.58255 -13.24374 -13.07865 -12.82149 -12.62593 -12.30769 -12.26137 -12.10489 -11.75837 -11.59550 -11.42258 -11.25932 -11.18793 -10.92862 -10.90874 -10.20632 -8.96800 -7.90970 -5.17989 -0.95400 -0.06837 0.29407 0.52610 1.47500 1.49318 1.56940 1.96881 2.02866 2.58647 2.72077 3.43311 3.62119 3.82592 3.91417 3.98362 4.22273 4.34428 4.37226 4.67190 4.75678 4.87928 5.01517 5.09105 5.19187 5.32458 5.40214 5.55854 5.62358 6.20827 6.31834 6.53780 6.97919 7.37856 8.15435 8.37019 9.32679 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.003572 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.282983 B = 7837.358832 C = 8473.613229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.131 3.869 6 N -0.696 5.696 7 C 0.595 3.405 8 O -0.564 6.564 9 C -0.043 4.043 10 C -0.241 4.241 11 S 0.574 5.426 12 N -0.330 5.330 13 N -0.232 5.232 14 N -0.736 5.736 15 C -0.233 4.233 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.967 3.033 20 H -0.291 1.291 21 H -0.297 1.297 22 H -0.269 1.269 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.418 0.582 31 H 0.226 0.774 32 H 0.371 0.629 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 -0.977 22.462 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.157 4.157 5 C 0.008 3.992 6 N -0.347 5.347 7 C 0.377 3.623 8 O -0.442 6.442 9 C -0.191 4.191 10 C -0.397 4.397 11 S 0.709 5.291 12 N -0.311 5.311 13 N -0.101 5.101 14 N -0.377 5.377 15 C -0.365 4.365 16 H 0.093 0.907 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.797 3.203 20 H -0.218 1.218 21 H -0.224 1.224 22 H -0.193 1.193 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.256 0.744 31 H 0.242 0.758 32 H 0.203 0.797 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.195 -1.429 23.351 24.476 hybrid contribution 0.032 0.583 -2.499 2.567 sum 7.227 -0.847 20.852 22.085 Atomic orbital electron populations 1.22266 0.97187 1.01009 1.00910 1.20437 0.93117 0.95294 0.85433 0.93527 1.21937 0.92425 1.02155 0.99154 1.21273 0.95542 0.96558 0.85845 1.45829 1.06767 1.55249 1.26860 1.17027 0.82950 0.79293 0.82985 1.90846 1.56449 1.47430 1.49434 1.22448 0.91536 1.05750 0.99355 1.29287 1.01306 1.04528 1.04626 1.81091 1.06891 1.30960 1.10167 1.78287 1.09786 1.23538 1.19498 1.71560 1.31552 1.08166 0.98838 1.42671 1.78382 1.10262 1.06349 1.19616 1.34368 0.94113 0.88405 0.90687 1.25487 1.03316 0.96828 1.01328 1.69808 1.52976 1.10192 1.29214 0.85229 0.77749 0.77528 0.79831 1.21846 1.22427 1.19337 0.94719 0.93763 0.90622 0.91162 0.87750 0.91873 0.93650 0.74418 0.75773 0.79663 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.49 71.98 0.68 -4.42 16 2 C 0.17 6.19 2.89 44.99 0.13 6.32 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 C -0.12 -3.49 4.87 30.59 0.15 -3.34 16 5 C 0.13 4.41 5.56 86.38 0.48 4.89 16 6 N -0.70 -20.10 5.55 -466.35 -2.59 -22.69 16 7 C 0.60 18.56 7.81 86.67 0.68 19.23 16 8 O -0.56 -21.68 16.80 -4.04 -0.07 -21.75 16 9 C -0.04 -1.05 6.87 41.36 0.28 -0.76 16 10 C -0.24 -3.97 11.21 67.76 0.76 -3.22 16 11 S 0.57 6.26 23.38 -56.49 -1.32 4.94 16 12 N -0.33 -6.58 12.49 37.02 0.46 -6.12 16 13 N -0.23 -5.54 11.24 -50.34 -0.57 -6.10 16 14 N -0.74 -36.53 4.57 -322.96 -1.48 -38.01 16 15 C -0.23 -12.96 9.93 84.03 0.83 -12.13 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 18 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 19 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 20 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 30 H 0.42 10.02 8.06 -92.71 -0.75 9.27 16 31 H 0.23 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 33 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.62 306.82 0.90 -72.73 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.32 Total: 25.55 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.46 Total: 2.51 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -3.89 Total: -133.16 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.07 Total: -21.75 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.32 Total: 4.94 kcal Total: -73.62 0.90 -72.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700325615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.656 kcal (2) G-P(sol) polarization free energy of solvation -73.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds