Wall clock time and date at job start Mon Mar 30 2020 01:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21626 * 119.99879 * 359.97438 * 7 6 5 9 9 C 1.47176 * 120.00233 * 180.02562 * 7 6 5 10 10 C 1.38246 * 128.47430 * 180.02562 * 9 7 6 11 11 N 1.31240 * 111.88639 * 179.97438 * 10 9 7 12 12 N 1.27343 * 120.03672 * 0.02562 * 11 10 9 13 13 S 1.56630 * 109.73962 * 359.69145 * 12 11 10 14 14 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 15 15 C 1.36931 * 119.99788 * 274.99780 * 14 3 2 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 3 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 3 18 18 N 1.31617 * 119.99873 * 180.27450 * 17 15 14 19 19 Si 1.86800 * 120.00209 * 0.27770 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99559 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00079 * 19 17 15 22 22 H 1.48507 * 109.46904 * 329.99901 * 19 17 15 23 23 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 24 24 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 26 26 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 27 27 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 28 28 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 29 29 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 30 30 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 31 31 H 1.07995 * 124.05596 * 0.02562 * 10 9 7 32 32 H 0.97000 * 119.99792 * 94.99575 * 14 3 2 33 33 H 0.97000 * 120.00553 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1655 2.1459 -0.2590 9 6 5.8861 4.4418 0.0341 10 6 7.1925 4.8906 -0.0221 11 7 7.2693 6.1925 0.1246 12 7 6.2099 6.8784 0.2942 13 16 4.9603 5.9342 0.2799 14 7 1.6525 2.0974 1.2520 15 6 0.4157 2.6733 1.3691 16 1 -0.2743 2.6445 0.5387 17 6 0.0465 3.2888 2.5573 18 7 -1.1443 3.8377 2.6717 19 14 1.2396 3.3381 3.9938 20 1 2.0704 4.5657 3.9052 21 1 0.4788 3.3462 5.2691 22 1 2.1180 2.1416 3.9489 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.9954 0.8311 0.6658 29 1 3.8498 1.0379 -1.0962 30 1 3.4410 3.5483 0.1316 31 1 8.0472 4.2472 -0.1700 32 1 2.2721 2.1229 1.9979 33 1 -1.4023 4.2681 3.5018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715045998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:03 Heat of formation + Delta-G solvation = 45.424139 kcal Electronic energy + Delta-G solvation = -18327.109992 eV Core-core repulsion = 15323.018094 eV Total energy + Delta-G solvation = -3004.091898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94960 -39.56259 -37.01544 -34.09115 -32.52749 -32.17215 -30.37632 -28.81954 -27.25230 -24.12721 -22.91243 -22.02935 -20.71861 -20.16335 -19.30524 -18.02684 -17.16269 -16.08644 -16.07619 -15.56126 -14.93343 -14.67412 -14.33408 -14.06503 -13.32360 -13.08912 -12.94197 -12.83227 -12.59434 -12.07164 -11.66882 -11.28624 -11.06442 -10.85718 -10.50185 -10.45888 -10.38527 -10.24886 -10.20299 -10.09105 -9.98563 -9.58331 -9.11424 -9.04568 -7.45583 -5.90325 -3.27400 -0.40645 0.68260 1.34926 1.82159 2.89172 2.98666 3.25112 3.29473 3.36602 3.87319 4.45744 4.53958 4.67304 5.06043 5.13347 5.35781 5.39539 5.61843 5.77373 5.79719 5.90005 6.16403 6.26120 6.40296 6.48789 6.58602 6.84151 7.21744 7.35759 7.49769 7.84328 7.99797 8.27516 9.04705 9.76997 9.95544 11.27031 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.006459 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.594726 B = 4333.786680 C = 5444.037477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.066 0.934 5 C 0.111 3.889 6 N -0.705 5.705 7 C 0.597 3.403 8 O -0.527 6.527 9 C -0.288 4.288 10 C 0.069 3.931 11 N -0.257 5.257 12 N -0.264 5.264 13 S 0.445 5.555 14 N -0.748 5.748 15 C -0.246 4.246 16 H 0.096 0.904 17 C 0.011 3.989 18 N -0.928 5.928 19 Si 0.874 3.126 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.410 0.590 31 H 0.215 0.785 32 H 0.362 0.638 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.018 -0.826 -6.416 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.057 3.943 4 H 0.083 0.917 5 C -0.013 4.013 6 N -0.357 5.357 7 C 0.380 3.620 8 O -0.405 6.405 9 C -0.429 4.429 10 C -0.098 4.098 11 N -0.120 5.120 12 N -0.245 5.245 13 S 0.580 5.420 14 N -0.392 5.392 15 C -0.375 4.375 16 H 0.114 0.886 17 C -0.186 4.186 18 N -0.575 5.575 19 Si 0.704 3.296 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.247 0.753 31 H 0.231 0.769 32 H 0.195 0.805 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.724 0.476 -6.313 12.454 hybrid contribution 1.158 -0.940 1.107 1.858 sum 11.882 -0.464 -5.206 12.981 Atomic orbital electron populations 1.21778 0.95089 0.99805 1.03819 1.22033 0.97464 0.97601 1.00221 1.20579 0.89445 0.93304 0.90975 0.91652 1.21879 0.95940 0.81370 1.02114 1.45942 1.06135 1.11756 1.71882 1.16493 0.82958 0.84920 0.77667 1.90827 1.56024 1.43919 1.49712 1.28162 0.98205 1.01283 1.15236 1.24438 0.97320 0.90403 0.97650 1.70713 1.19953 1.06035 1.15345 1.78807 0.99044 1.26906 1.19736 1.83067 1.18818 0.92076 1.48045 1.42866 1.17071 1.67676 1.11544 1.19045 0.90807 1.27783 0.99872 0.88605 1.24649 0.96262 1.00321 0.97360 1.69677 1.19030 1.42039 1.26721 0.86728 0.81162 0.77817 0.83881 1.20991 1.21678 1.20321 0.93826 0.94792 0.89330 0.93446 0.92576 0.91182 0.90698 0.75342 0.76897 0.80541 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.18 37.16 0.34 -2.13 16 2 C -0.13 -2.01 5.61 -26.73 -0.15 -2.16 16 3 C 0.17 2.66 2.59 -67.93 -0.18 2.48 16 4 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 5 C 0.11 1.55 5.23 -4.04 -0.02 1.53 16 6 N -0.71 -9.86 5.38 -61.47 -0.33 -10.19 16 7 C 0.60 8.48 7.80 -12.63 -0.10 8.38 16 8 O -0.53 -8.70 16.98 5.25 0.09 -8.61 16 9 C -0.29 -3.61 6.81 -35.95 -0.24 -3.85 16 10 C 0.07 0.81 11.55 -17.80 -0.21 0.61 16 11 N -0.26 -3.41 11.54 30.36 0.35 -3.06 16 12 N -0.26 -3.56 12.51 60.35 0.75 -2.80 16 13 S 0.45 5.28 23.05 -107.50 -2.48 2.80 16 14 N -0.75 -14.85 4.31 -53.42 -0.23 -15.08 16 15 C -0.25 -5.94 8.24 -15.06 -0.12 -6.06 16 16 H 0.10 2.50 7.55 -52.49 -0.40 2.11 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 18 N -0.93 -26.81 13.97 55.49 0.78 -26.04 16 19 Si 0.87 20.30 27.74 -169.99 -4.72 15.58 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.15 6.51 56.52 0.37 -5.78 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 1.81 5.99 -51.93 -0.31 1.50 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.41 5.70 7.57 -40.82 -0.31 5.39 16 31 H 0.21 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.36 7.33 5.66 -40.82 -0.23 7.10 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -29.21 298.79 -5.85 -35.06 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.79 Total: 8.84 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.78 Total: -1.01 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 1.32 Total: -57.17 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.72 Total: 15.58 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -2.48 Total: 2.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.21 -5.85 -35.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715045998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.488 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds