Wall clock time and date at job start Mon Mar 30 2020 01:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21626 * 119.99879 * 359.97438 * 7 6 5 9 9 C 1.47176 * 120.00233 * 180.02562 * 7 6 5 10 10 C 1.38246 * 128.47430 * 180.02562 * 9 7 6 11 11 N 1.31240 * 111.88639 * 179.97438 * 10 9 7 12 12 N 1.27343 * 120.03672 * 0.02562 * 11 10 9 13 13 S 1.56630 * 109.73962 * 359.69145 * 12 11 10 14 14 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 15 15 C 1.36931 * 119.99788 * 274.99780 * 14 3 2 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 3 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 3 18 18 N 1.31617 * 119.99873 * 180.27450 * 17 15 14 19 19 Si 1.86800 * 120.00209 * 0.27770 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99559 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00079 * 19 17 15 22 22 H 1.48507 * 109.46904 * 329.99901 * 19 17 15 23 23 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 24 24 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 26 26 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 27 27 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 28 28 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 29 29 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 30 30 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 31 31 H 1.07995 * 124.05596 * 0.02562 * 10 9 7 32 32 H 0.97000 * 119.99792 * 94.99575 * 14 3 2 33 33 H 0.97000 * 120.00553 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1655 2.1459 -0.2590 9 6 5.8861 4.4418 0.0341 10 6 7.1925 4.8906 -0.0221 11 7 7.2693 6.1925 0.1246 12 7 6.2099 6.8784 0.2942 13 16 4.9603 5.9342 0.2799 14 7 1.6525 2.0974 1.2520 15 6 0.4157 2.6733 1.3691 16 1 -0.2743 2.6445 0.5387 17 6 0.0465 3.2888 2.5573 18 7 -1.1443 3.8377 2.6717 19 14 1.2396 3.3381 3.9938 20 1 2.0704 4.5657 3.9052 21 1 0.4788 3.3462 5.2691 22 1 2.1180 2.1416 3.9489 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.9954 0.8311 0.6658 29 1 3.8498 1.0379 -1.0962 30 1 3.4410 3.5483 0.1316 31 1 8.0472 4.2472 -0.1700 32 1 2.2721 2.1229 1.9979 33 1 -1.4023 4.2681 3.5018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715045998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:03 Heat of formation + Delta-G solvation = 23.966326 kcal Electronic energy + Delta-G solvation = -18328.040473 eV Core-core repulsion = 15323.018094 eV Total energy + Delta-G solvation = -3005.022378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93655 -40.70156 -38.41041 -35.41275 -34.19311 -33.21199 -32.05359 -30.07318 -28.37693 -25.55022 -24.41538 -23.18100 -21.89351 -21.45177 -20.32432 -19.63386 -18.45922 -17.22176 -17.18487 -16.88723 -16.10065 -16.01086 -15.70615 -15.33423 -14.73143 -14.64598 -14.44146 -14.08225 -13.84631 -13.08710 -13.00610 -12.90149 -12.82201 -12.36692 -12.07476 -11.86989 -11.61106 -11.50054 -11.38851 -11.25305 -11.22010 -10.97565 -10.89972 -10.20541 -9.27341 -7.92600 -5.24792 -1.39479 -0.26902 0.37889 0.85177 1.40322 1.43114 1.49716 1.81947 1.90418 2.53741 2.93707 3.38582 3.55041 3.60429 3.69401 3.88704 4.34046 4.47333 4.56069 4.58858 4.74275 4.84842 5.07869 5.10926 5.22399 5.33720 5.55139 5.76278 5.91229 6.25472 6.29938 6.51729 6.88602 7.16275 7.90576 8.08421 9.28266 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.006459 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.594726 B = 4333.786680 C = 5444.037477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.165 3.835 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.706 5.706 7 C 0.604 3.396 8 O -0.550 6.550 9 C -0.299 4.299 10 C 0.080 3.920 11 N -0.273 5.273 12 N -0.284 5.284 13 S 0.476 5.524 14 N -0.748 5.748 15 C -0.203 4.203 16 H 0.071 0.929 17 C -0.057 4.057 18 N -0.981 5.981 19 Si 0.929 3.071 20 H -0.275 1.275 21 H -0.309 1.309 22 H -0.258 1.258 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.410 0.590 31 H 0.238 0.762 32 H 0.363 0.637 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.951 -1.885 -7.157 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.057 3.943 4 H 0.083 0.917 5 C -0.005 4.005 6 N -0.358 5.358 7 C 0.387 3.613 8 O -0.429 6.429 9 C -0.441 4.441 10 C -0.087 4.087 11 N -0.136 5.136 12 N -0.265 5.265 13 S 0.611 5.389 14 N -0.392 5.392 15 C -0.334 4.334 16 H 0.089 0.911 17 C -0.248 4.248 18 N -0.633 5.633 19 Si 0.759 3.241 20 H -0.201 1.201 21 H -0.237 1.237 22 H -0.183 1.183 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.247 0.753 31 H 0.254 0.746 32 H 0.196 0.804 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.708 -0.607 -7.090 14.565 hybrid contribution 0.529 -0.677 1.204 1.479 sum 13.237 -1.283 -5.886 14.544 Atomic orbital electron populations 1.21697 0.96507 1.00369 1.01617 1.21961 0.96007 0.96941 1.01894 1.20755 0.91102 0.93524 0.88917 0.91695 1.21809 0.93885 0.81519 1.03320 1.45948 1.06217 1.11796 1.71798 1.16523 0.82630 0.85165 0.76953 1.90819 1.56447 1.44758 1.50879 1.28038 0.98729 1.00844 1.16454 1.24813 0.97810 0.90020 0.96081 1.70750 1.20104 1.06667 1.16049 1.78715 0.99702 1.27785 1.20320 1.82954 1.17803 0.91354 1.46832 1.42864 1.15460 1.67668 1.13162 1.18958 0.91402 1.24795 0.98238 0.91070 1.25248 0.97699 1.01764 1.00111 1.69839 1.21453 1.44905 1.27071 0.85798 0.79379 0.78768 0.80171 1.20086 1.23684 1.18314 0.93829 0.92956 0.93586 0.89993 0.92616 0.91135 0.88595 0.75329 0.74593 0.80402 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.18 71.98 0.66 -3.95 16 2 C -0.13 -3.49 5.61 30.59 0.17 -3.31 16 3 C 0.17 4.85 2.59 44.99 0.12 4.97 16 4 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 5 C 0.12 2.93 5.23 86.38 0.45 3.38 16 6 N -0.71 -17.90 5.38 -466.63 -2.51 -20.41 16 7 C 0.60 15.63 7.80 86.59 0.68 16.31 16 8 O -0.55 -16.68 16.98 -4.11 -0.07 -16.75 16 9 C -0.30 -6.85 6.81 24.62 0.17 -6.68 16 10 C 0.08 1.71 11.55 84.78 0.98 2.68 16 11 N -0.27 -6.77 11.54 -57.87 -0.67 -7.44 16 12 N -0.28 -7.25 12.51 37.02 0.46 -6.79 16 13 S 0.48 10.47 23.05 -56.49 -1.30 9.17 16 14 N -0.75 -28.44 4.31 -322.93 -1.39 -29.83 16 15 C -0.20 -9.79 8.24 84.04 0.69 -9.10 16 16 H 0.07 3.78 7.55 -2.91 -0.02 3.76 16 17 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 18 N -0.98 -58.40 13.97 21.65 0.30 -58.10 16 19 Si 0.93 41.78 27.74 68.60 1.90 43.69 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 22 H -0.26 -10.61 6.51 99.48 0.65 -9.97 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.86 5.99 -2.38 -0.01 1.84 16 26 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.41 10.47 7.57 -92.71 -0.70 9.77 16 31 H 0.24 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.36 13.83 5.66 -92.71 -0.52 13.31 16 33 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -62.89 298.79 0.98 -61.92 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.13 Total: 22.82 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 4.38 Total: 1.74 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -3.81 Total: -122.58 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.07 Total: -16.75 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.90 Total: 43.69 kcal Atomic # 16 Polarization: 10.47 SS G_CDS: -1.30 Total: 9.17 kcal Total: -62.89 0.98 -61.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715045998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.884 kcal (2) G-P(sol) polarization free energy of solvation -62.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds