Wall clock time and date at job start Mon Mar 30 2020 01:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47131 * 2 1 4 4 H 1.08997 * 109.46604 * 54.99732 * 3 2 1 5 5 C 1.52999 * 109.46984 * 175.00107 * 3 2 1 6 6 N 1.46506 * 109.46684 * 175.00142 * 5 3 2 7 7 C 1.34777 * 119.99873 * 180.02562 * 6 5 3 8 8 O 1.21623 * 120.00076 * 359.97438 * 7 6 5 9 9 C 1.47166 * 119.99834 * 179.97438 * 7 6 5 10 10 C 1.38249 * 128.47394 * 179.97438 * 9 7 6 11 11 N 1.31243 * 111.89161 * 180.02562 * 10 9 7 12 12 N 1.27338 * 120.03429 * 359.97438 * 11 10 9 13 13 S 1.56640 * 109.74181 * 359.70057 * 12 11 10 14 14 N 1.46497 * 109.46622 * 294.99975 * 3 2 1 15 15 C 1.36940 * 120.00012 * 85.00488 * 14 3 2 16 16 H 1.07997 * 120.00297 * 359.97438 * 15 14 3 17 17 C 1.38814 * 119.99883 * 179.97438 * 15 14 3 18 18 N 1.31619 * 120.00182 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46968 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47363 * 119.99369 * 19 17 15 22 22 H 1.48500 * 109.47306 * 240.00049 * 19 17 15 23 23 H 1.09001 * 109.46769 * 299.99905 * 1 2 3 24 24 H 1.08997 * 109.47170 * 60.00271 * 1 2 3 25 25 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47463 * 240.00368 * 2 1 3 27 27 H 1.09003 * 109.47582 * 119.99858 * 2 1 3 28 28 H 1.09000 * 109.47486 * 55.00077 * 5 3 2 29 29 H 1.09001 * 109.47362 * 294.99354 * 5 3 2 30 30 H 0.96995 * 120.00050 * 359.72237 * 6 5 3 31 31 H 1.08004 * 124.05854 * 0.02562 * 10 9 7 32 32 H 0.97001 * 120.00330 * 264.99061 * 14 3 2 33 33 H 0.96996 * 120.00088 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3857 3.0631 0.0858 8 8 6.1657 2.1459 0.2577 9 6 5.8861 4.4418 -0.0351 10 6 7.1926 4.8905 0.0201 11 7 7.2694 6.1925 -0.1262 12 7 6.2099 6.8785 -0.2945 13 16 4.9614 5.9325 -0.2950 14 7 1.6524 2.0974 -1.2518 15 6 0.4156 2.6735 -1.3688 16 1 -0.2743 2.6447 -0.5384 17 6 0.0485 3.2945 -2.5548 18 7 0.8894 3.3300 -3.5667 19 14 -1.6389 4.0796 -2.7146 20 1 -2.3890 3.9037 -1.4451 21 1 -1.4855 5.5283 -3.0027 22 1 -2.3839 3.4305 -3.8232 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9954 0.8312 -0.6659 29 1 3.8499 1.0378 1.0960 30 1 3.4413 3.5479 -0.1352 31 1 8.0475 4.2469 0.1661 32 1 2.2719 2.1232 -1.9978 33 1 0.6331 3.7643 -4.3953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715046021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:05 Heat of formation + Delta-G solvation = 20.950691 kcal Electronic energy + Delta-G solvation = -18244.819792 eV Core-core repulsion = 15239.666646 eV Total energy + Delta-G solvation = -3005.153146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.89847 -40.64621 -38.26729 -35.35357 -34.16452 -33.17502 -31.47494 -29.91320 -28.30670 -25.71355 -24.54246 -23.15488 -21.82259 -21.29549 -20.24148 -19.26147 -18.43185 -17.16189 -17.11415 -16.81892 -16.11382 -15.87204 -15.59974 -15.37937 -14.89767 -14.54962 -14.15863 -13.83136 -13.76727 -13.00482 -12.94449 -12.79427 -12.75662 -12.32651 -12.05043 -11.84006 -11.60663 -11.46609 -11.29853 -11.21551 -11.18235 -10.93083 -10.86760 -10.14818 -8.94386 -7.84724 -5.11248 -1.35601 -0.22795 0.41974 0.88116 1.51516 1.55389 1.61637 1.84667 1.97240 2.62577 2.96849 3.49523 3.61892 3.69077 3.93056 3.97449 4.41248 4.51879 4.58214 4.60917 4.76732 4.91415 5.10960 5.14834 5.24712 5.37828 5.59650 5.66783 5.76873 6.31167 6.35855 6.54973 6.93419 7.44539 8.15618 8.39974 9.38023 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.005973 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.354560 B = 4686.807133 C = 6019.524393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.162 3.838 4 H 0.064 0.936 5 C 0.120 3.880 6 N -0.700 5.700 7 C 0.602 3.398 8 O -0.555 6.555 9 C -0.300 4.300 10 C 0.078 3.922 11 N -0.273 5.273 12 N -0.286 5.286 13 S 0.485 5.515 14 N -0.729 5.729 15 C -0.212 4.212 16 H 0.082 0.918 17 C -0.070 4.070 18 N -0.965 5.965 19 Si 0.952 3.048 20 H -0.266 1.266 21 H -0.299 1.299 22 H -0.306 1.306 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.410 0.590 31 H 0.237 0.763 32 H 0.373 0.627 33 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -0.088 9.910 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.053 3.947 4 H 0.081 0.919 5 C -0.004 4.004 6 N -0.351 5.351 7 C 0.385 3.615 8 O -0.434 6.434 9 C -0.441 4.441 10 C -0.089 4.089 11 N -0.136 5.136 12 N -0.268 5.268 13 S 0.620 5.380 14 N -0.370 5.370 15 C -0.344 4.344 16 H 0.100 0.900 17 C -0.262 4.262 18 N -0.617 5.617 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.227 1.227 22 H -0.234 1.234 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.247 0.753 31 H 0.253 0.747 32 H 0.205 0.795 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.015 1.187 9.841 11.594 hybrid contribution -0.336 -0.505 -0.833 1.030 sum 5.679 0.682 9.008 10.671 Atomic orbital electron populations 1.21703 0.96119 1.00513 1.01806 1.21987 0.96508 0.97263 1.01233 1.20769 0.90776 0.93480 0.89672 0.91852 1.21758 0.94526 0.81519 1.02550 1.45895 1.06144 1.11734 1.71332 1.16565 0.82685 0.85237 0.76967 1.90803 1.56505 1.44874 1.51265 1.28020 0.98846 1.00958 1.16270 1.24793 0.97754 0.90106 0.96291 1.70745 1.20127 1.06587 1.16178 1.78674 0.99823 1.27821 1.20463 1.82921 1.17650 0.91115 1.46331 1.42612 1.15845 1.66075 1.12419 1.19518 0.92484 1.24974 0.97421 0.90041 1.25296 1.00560 1.03578 0.96767 1.69789 1.36585 1.50996 1.04316 0.85373 0.81391 0.77478 0.77342 1.19023 1.22671 1.23385 0.93162 0.93295 0.93052 0.93500 0.90439 0.92081 0.88990 0.75315 0.74719 0.79477 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.18 71.98 0.66 -3.79 16 2 C -0.13 -3.75 5.61 30.60 0.17 -3.58 16 3 C 0.16 5.08 2.59 44.99 0.12 5.20 16 4 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 5 C 0.12 3.39 5.23 86.38 0.45 3.84 16 6 N -0.70 -20.04 5.39 -466.62 -2.51 -22.55 16 7 C 0.60 17.50 7.80 86.59 0.68 18.17 16 8 O -0.55 -18.64 16.98 -4.11 -0.07 -18.71 16 9 C -0.30 -7.63 6.81 24.62 0.17 -7.46 16 10 C 0.08 1.84 11.55 84.78 0.98 2.82 16 11 N -0.27 -7.29 11.54 -57.86 -0.67 -7.96 16 12 N -0.29 -7.78 12.51 37.02 0.46 -7.31 16 13 S 0.49 11.59 23.05 -56.49 -1.30 10.28 16 14 N -0.73 -30.14 4.50 -322.94 -1.45 -31.59 16 15 C -0.21 -9.91 7.75 84.03 0.65 -9.26 16 16 H 0.08 3.67 7.32 -2.91 -0.02 3.64 16 17 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 18 N -0.97 -53.90 13.06 21.65 0.28 -53.61 16 19 Si 0.95 42.55 29.55 68.60 2.03 44.58 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.87 5.99 -2.39 -0.01 1.86 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.41 11.87 7.56 -92.71 -0.70 11.17 16 31 H 0.24 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.37 17.33 7.80 -92.71 -0.72 16.61 16 33 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -59.30 301.91 0.84 -58.46 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.27 Total: 25.59 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.34 Total: 2.83 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.89 Total: -123.04 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.07 Total: -18.71 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 11.59 SS G_CDS: -1.30 Total: 10.28 kcal Total: -59.30 0.84 -58.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715046021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.411 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds