Wall clock time and date at job start Mon Mar 30 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47259 * 239.99693 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00068 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99986 * 179.97438 * 6 5 4 8 8 H 1.07993 * 119.99726 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99931 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99979 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99862 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47438 * 89.99572 * 11 9 7 13 13 H 1.48498 * 109.46933 * 209.99814 * 11 9 7 14 14 H 1.48497 * 109.46757 * 329.99183 * 11 9 7 15 15 N 1.46505 * 109.46989 * 119.99811 * 2 1 3 16 16 C 1.34777 * 119.99724 * 275.00379 * 15 2 1 17 17 O 1.21623 * 120.00245 * 359.97438 * 16 15 2 18 18 C 1.47171 * 119.99849 * 179.72618 * 16 15 2 19 19 C 1.38244 * 128.47985 * 179.97438 * 18 16 15 20 20 N 1.31234 * 111.89093 * 179.81184 * 19 18 16 21 21 N 1.27342 * 120.03767 * 0.52994 * 20 19 18 22 22 S 1.56637 * 109.73976 * 359.69112 * 21 20 19 23 23 H 1.09008 * 109.47252 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47658 * 300.00354 * 1 2 3 25 25 H 1.09003 * 109.47063 * 60.00162 * 1 2 3 26 26 H 1.09003 * 109.47445 * 295.00204 * 4 2 1 27 27 H 1.09002 * 109.47282 * 55.00246 * 4 2 1 28 28 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 29 29 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 30 30 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 31 31 H 0.97001 * 119.99877 * 180.02562 * 10 9 7 32 32 H 0.97000 * 119.99792 * 94.99947 * 15 2 1 33 33 H 1.08000 * 124.05040 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3952 -1.3393 -2.7800 8 1 6.0936 -0.8591 -2.1107 9 6 5.8579 -1.9927 -3.9139 10 7 5.0067 -2.5783 -4.7293 11 14 7.6886 -2.0422 -4.2818 12 1 8.2887 -3.2433 -3.6476 13 1 7.8968 -2.1018 -5.7509 14 1 8.3356 -0.8206 -3.7394 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0182 2.3572 17 8 1.8580 1.1620 2.4117 18 6 2.6317 -0.7133 3.5604 19 6 2.8290 -0.2010 4.8291 20 7 3.2693 -1.1141 5.6625 21 7 3.4720 -2.3037 5.2559 22 16 3.1128 -2.4113 3.7350 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7516 -1.7716 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 3.8532 0.4369 -1.3573 29 1 3.9994 -1.0728 -0.4258 30 1 3.4258 -1.7351 -3.1110 31 1 5.3300 -3.0353 -5.5215 32 1 2.2490 -1.6318 1.1527 33 1 2.6406 0.8268 5.1023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716122174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:28 Heat of formation + Delta-G solvation = 41.217928 kcal Electronic energy + Delta-G solvation = -17798.757954 eV Core-core repulsion = 14794.483662 eV Total energy + Delta-G solvation = -3004.274293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09412 -39.85932 -36.70586 -34.47406 -32.72695 -31.82473 -30.71446 -27.97857 -27.71803 -24.28776 -23.45401 -21.66698 -20.87664 -20.78130 -19.53269 -17.74140 -17.01016 -16.51363 -16.14506 -15.28637 -14.98820 -14.63914 -14.46030 -13.95284 -13.58453 -13.42334 -12.99804 -12.91147 -12.57410 -12.25110 -11.97586 -11.30414 -11.10022 -10.87932 -10.75870 -10.64909 -10.59463 -10.37566 -10.29596 -10.12614 -10.09456 -9.76030 -9.27540 -8.92168 -6.98567 -5.81860 -3.11023 -0.54665 0.52858 1.19976 1.69939 2.75159 2.79383 3.40412 3.46081 3.47535 3.74073 4.39549 4.44839 4.54000 4.84969 5.09491 5.22073 5.28679 5.48952 5.60090 5.63482 5.81119 5.89011 6.12257 6.16422 6.23603 6.29038 6.70976 6.75817 7.16122 7.35646 7.65396 7.83710 8.37043 9.48424 10.05015 10.39607 11.40934 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.004318 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.966330 B = 6482.510067 C = 7462.953820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.094 0.906 4 C -0.137 4.137 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.242 4.242 8 H 0.070 0.930 9 C -0.012 4.012 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.708 5.708 16 C 0.602 3.398 17 O -0.519 6.519 18 C -0.285 4.285 19 C 0.072 3.928 20 N -0.254 5.254 21 N -0.259 5.259 22 S 0.432 5.568 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.401 0.599 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 1.786 15.316 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.112 0.888 4 C -0.175 4.175 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.373 4.373 8 H 0.088 0.912 9 C -0.208 4.208 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.360 5.360 16 C 0.385 3.615 17 O -0.396 6.396 18 C -0.427 4.427 19 C -0.095 4.095 20 N -0.118 5.118 21 N -0.240 5.240 22 S 0.567 5.433 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.236 0.764 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.983 0.924 16.000 18.373 hybrid contribution 0.589 0.731 -0.702 1.172 sum -8.394 1.655 15.299 17.528 Atomic orbital electron populations 1.22180 0.94942 1.02296 1.02652 1.21120 0.93883 0.97849 0.83003 0.88752 1.22098 0.98182 1.00942 0.96254 1.20647 0.90250 0.95785 0.90818 1.42353 1.05426 1.64984 1.25024 1.19217 0.83789 1.28730 1.05553 0.91249 1.24736 0.97725 1.00790 0.97581 1.69653 1.32825 1.40593 1.15101 0.86196 0.85063 0.77717 0.77263 1.21668 1.21694 1.20742 1.46051 1.66375 1.14112 1.09412 1.16458 0.77885 0.85953 0.81229 1.90846 1.49955 1.14462 1.84307 1.28147 1.13821 1.00063 1.00624 1.24466 0.96250 1.01945 0.86864 1.70706 1.14921 0.94928 1.31236 1.78862 1.20393 1.15687 1.09105 1.82785 1.42814 1.06869 1.10839 0.92311 0.92254 0.91090 0.91134 0.89785 0.96283 0.96544 0.78261 0.93463 0.76384 0.76796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 2 C 0.15 1.72 2.57 -67.93 -0.17 1.54 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C -0.14 -1.89 4.87 -26.73 -0.13 -2.02 16 5 C 0.15 2.86 6.15 -4.04 -0.02 2.83 16 6 N -0.73 -17.88 5.60 -59.91 -0.34 -18.21 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 10 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 11 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 N -0.71 -7.83 4.53 -54.96 -0.25 -8.08 16 16 C 0.60 7.26 7.77 -12.63 -0.10 7.16 16 17 O -0.52 -7.70 16.64 5.26 0.09 -7.62 16 18 C -0.29 -2.96 6.81 -35.95 -0.25 -3.21 16 19 C 0.07 0.73 11.55 -17.80 -0.21 0.52 16 20 N -0.25 -2.97 11.54 30.36 0.35 -2.62 16 21 N -0.26 -3.00 12.51 60.35 0.75 -2.24 16 22 S 0.43 3.93 23.05 -107.50 -2.48 1.45 16 23 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.31 7.75 -51.93 -0.40 -0.10 16 30 H 0.38 9.75 7.67 -40.82 -0.31 9.44 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.40 3.81 8.03 -40.82 -0.33 3.49 16 33 H 0.22 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -32.48 306.57 -6.26 -38.74 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.94 Total: 5.49 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.77 Total: -1.68 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 1.25 Total: -58.07 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.48 Total: 1.45 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.48 -6.26 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716122174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.961 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds