Wall clock time and date at job start Mon Mar 30 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47259 * 239.99693 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00068 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99986 * 179.97438 * 6 5 4 8 8 H 1.07993 * 119.99726 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99931 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99979 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99862 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47438 * 89.99572 * 11 9 7 13 13 H 1.48498 * 109.46933 * 209.99814 * 11 9 7 14 14 H 1.48497 * 109.46757 * 329.99183 * 11 9 7 15 15 N 1.46505 * 109.46989 * 119.99811 * 2 1 3 16 16 C 1.34777 * 119.99724 * 275.00379 * 15 2 1 17 17 O 1.21623 * 120.00245 * 359.97438 * 16 15 2 18 18 C 1.47171 * 119.99849 * 179.72618 * 16 15 2 19 19 C 1.38244 * 128.47985 * 179.97438 * 18 16 15 20 20 N 1.31234 * 111.89093 * 179.81184 * 19 18 16 21 21 N 1.27342 * 120.03767 * 0.52994 * 20 19 18 22 22 S 1.56637 * 109.73976 * 359.69112 * 21 20 19 23 23 H 1.09008 * 109.47252 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47658 * 300.00354 * 1 2 3 25 25 H 1.09003 * 109.47063 * 60.00162 * 1 2 3 26 26 H 1.09003 * 109.47445 * 295.00204 * 4 2 1 27 27 H 1.09002 * 109.47282 * 55.00246 * 4 2 1 28 28 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 29 29 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 30 30 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 31 31 H 0.97001 * 119.99877 * 180.02562 * 10 9 7 32 32 H 0.97000 * 119.99792 * 94.99947 * 15 2 1 33 33 H 1.08000 * 124.05040 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3952 -1.3393 -2.7800 8 1 6.0936 -0.8591 -2.1107 9 6 5.8579 -1.9927 -3.9139 10 7 5.0067 -2.5783 -4.7293 11 14 7.6886 -2.0422 -4.2818 12 1 8.2887 -3.2433 -3.6476 13 1 7.8968 -2.1018 -5.7509 14 1 8.3356 -0.8206 -3.7394 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0182 2.3572 17 8 1.8580 1.1620 2.4117 18 6 2.6317 -0.7133 3.5604 19 6 2.8290 -0.2010 4.8291 20 7 3.2693 -1.1141 5.6625 21 7 3.4720 -2.3037 5.2559 22 16 3.1128 -2.4113 3.7350 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7516 -1.7716 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 3.8532 0.4369 -1.3573 29 1 3.9994 -1.0728 -0.4258 30 1 3.4258 -1.7351 -3.1110 31 1 5.3300 -3.0353 -5.5215 32 1 2.2490 -1.6318 1.1527 33 1 2.6406 0.8268 5.1023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716122174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:27 Heat of formation + Delta-G solvation = 17.401595 kcal Electronic energy + Delta-G solvation = -17799.790708 eV Core-core repulsion = 14794.483662 eV Total energy + Delta-G solvation = -3005.307046 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93167 -40.82981 -37.90723 -36.13424 -33.85246 -33.20150 -32.00308 -29.42530 -28.56643 -25.90374 -24.56270 -23.13424 -21.91172 -21.74735 -20.34519 -19.25142 -18.41372 -17.51092 -17.00437 -16.69315 -16.12456 -15.87677 -15.47262 -15.40175 -15.17086 -14.89331 -14.27404 -13.83721 -13.64450 -13.14318 -13.01444 -12.87963 -12.83596 -12.36965 -12.26321 -11.98701 -11.93551 -11.64130 -11.48282 -11.21931 -11.19312 -10.94250 -10.92705 -10.23512 -8.99286 -7.95425 -5.23814 -1.37330 -0.25338 0.40140 0.86823 1.48601 1.49164 1.57685 1.83189 1.88420 2.55993 2.94886 3.38815 3.53140 3.62124 3.73015 4.06031 4.17945 4.40340 4.57032 4.59156 4.64722 4.79719 4.84750 5.00899 5.18249 5.30468 5.35811 5.46206 5.50094 6.25535 6.28281 6.54432 6.92020 7.34607 8.10223 8.33552 9.27807 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.004318 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.966330 B = 6482.510067 C = 7462.953820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.152 3.848 3 H 0.080 0.920 4 C -0.121 4.121 5 C 0.150 3.850 6 N -0.745 5.745 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.969 3.031 12 H -0.285 1.285 13 H -0.295 1.295 14 H -0.273 1.273 15 N -0.704 5.704 16 C 0.606 3.394 17 O -0.550 6.550 18 C -0.301 4.301 19 C 0.077 3.923 20 N -0.275 5.275 21 N -0.288 5.288 22 S 0.495 5.505 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.009 0.991 29 H 0.024 0.976 30 H 0.376 0.624 31 H 0.252 0.748 32 H 0.410 0.590 33 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 1.525 15.853 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.098 0.902 4 C -0.159 4.159 5 C 0.024 3.976 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.089 0.911 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.798 3.202 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.198 1.198 15 N -0.355 5.355 16 C 0.390 3.610 17 O -0.429 6.429 18 C -0.442 4.442 19 C -0.090 4.090 20 N -0.138 5.138 21 N -0.269 5.269 22 S 0.630 5.370 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.042 0.958 30 H 0.209 0.791 31 H 0.061 0.939 32 H 0.246 0.754 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.124 0.658 16.580 18.936 hybrid contribution 0.618 0.806 -0.853 1.327 sum -8.506 1.464 15.727 17.939 Atomic orbital electron populations 1.22113 0.93035 1.03295 1.02907 1.20982 0.95220 0.96721 0.82269 0.90223 1.21939 0.94543 1.02040 0.97417 1.20816 0.93570 0.94390 0.88856 1.42553 1.04432 1.65330 1.26531 1.19582 0.85356 1.27695 1.05302 0.91085 1.25490 1.01685 1.01262 0.97827 1.69790 1.34484 1.41850 1.15546 0.85215 0.80468 0.77933 0.76603 1.21224 1.22123 1.19818 1.46006 1.66023 1.14488 1.09014 1.16551 0.77292 0.85559 0.81622 1.90832 1.51417 1.15814 1.84842 1.28019 1.14841 1.01179 1.00182 1.24770 0.95211 1.02493 0.86573 1.70757 1.15920 0.95143 1.32008 1.78680 1.21308 1.16034 1.10868 1.82516 1.40606 1.05101 1.08815 0.90931 0.92704 0.90156 0.89954 0.89620 0.97273 0.95800 0.79145 0.93920 0.75368 0.75128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 2 C 0.15 3.35 2.57 44.99 0.12 3.46 16 3 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 4 C -0.12 -3.15 4.87 30.59 0.15 -3.00 16 5 C 0.15 5.46 6.15 86.38 0.53 5.99 16 6 N -0.75 -35.93 5.60 -343.45 -1.92 -37.85 16 7 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 10 N -0.97 -57.34 13.06 21.65 0.28 -57.05 16 11 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 N -0.70 -14.32 4.53 -446.05 -2.02 -16.34 16 16 C 0.61 13.80 7.77 86.59 0.67 14.48 16 17 O -0.55 -15.88 16.64 -4.10 -0.07 -15.95 16 18 C -0.30 -5.81 6.81 24.62 0.17 -5.64 16 19 C 0.08 1.47 11.55 84.78 0.98 2.45 16 20 N -0.28 -6.17 11.54 -57.87 -0.67 -6.84 16 21 N -0.29 -6.29 12.51 37.02 0.46 -5.83 16 22 S 0.49 8.08 23.05 -56.49 -1.30 6.78 16 23 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.02 0.85 7.75 -2.39 -0.02 0.83 16 30 H 0.38 19.03 7.67 -92.71 -0.71 18.32 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.41 6.86 8.03 -92.71 -0.74 6.12 16 33 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -68.32 306.57 1.09 -67.23 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.30 Total: 19.11 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.60 Total: -0.42 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -3.87 Total: -123.91 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.07 Total: -15.95 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 8.08 SS G_CDS: -1.30 Total: 6.78 kcal Total: -68.32 1.09 -67.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716122174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.634 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds