Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31240 * 124.05663 * 2 1 4 4 N 1.27334 * 120.03757 * 180.36890 * 3 2 1 5 5 S 1.56632 * 109.74142 * 359.69406 * 4 3 2 6 6 C 1.38243 * 124.05684 * 179.82009 * 2 1 3 7 7 C 1.47175 * 128.47671 * 359.97438 * 6 2 1 8 8 O 1.21623 * 119.99832 * 359.70140 * 7 6 2 9 9 N 1.34777 * 120.00199 * 179.70537 * 7 6 2 10 10 C 1.46498 * 119.99828 * 180.27666 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 N 1.46500 * 109.47226 * 304.99288 * 13 10 9 15 15 C 1.36937 * 119.99856 * 179.97438 * 14 13 10 16 16 H 1.07995 * 120.00314 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99459 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00523 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47270 * 89.99790 * 19 17 15 21 21 H 1.48499 * 109.46961 * 209.99813 * 19 17 15 22 22 H 1.48506 * 109.47250 * 329.99900 * 19 17 15 23 23 H 1.09001 * 109.46729 * 270.17878 * 1 2 3 24 24 H 1.08998 * 109.47160 * 30.18220 * 1 2 3 25 25 H 1.08998 * 109.47148 * 150.18300 * 1 2 3 26 26 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 27 27 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 28 28 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 29 29 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 30 30 H 1.08995 * 109.47415 * 64.99597 * 13 10 9 31 31 H 1.09008 * 109.47087 * 184.99936 * 13 10 9 32 32 H 0.96998 * 120.00120 * 0.02562 * 14 13 10 33 33 H 0.96991 * 119.99962 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 -0.0071 5 16 3.9366 -0.5096 -0.0069 6 6 2.2812 -1.1453 0.0036 7 6 1.8394 -2.5492 0.0085 8 8 0.6522 -2.8131 0.0153 9 7 2.7505 -3.5424 0.0055 10 6 2.3107 -4.9398 0.0043 11 1 1.3948 -5.0320 -0.5795 12 6 2.0468 -5.3926 1.4417 13 6 3.4007 -5.8169 -0.6147 14 7 3.7378 -5.3096 -1.9471 15 6 4.6954 -5.9385 -2.6972 16 1 5.2018 -6.8088 -2.3067 17 6 5.0150 -5.4574 -3.9595 18 7 4.3982 -4.3965 -4.4352 19 14 6.3208 -6.3158 -4.9830 20 1 5.6844 -7.3669 -5.8170 21 1 6.9911 -5.3245 -5.8624 22 1 7.3250 -6.9383 -4.0833 23 1 -0.3633 0.0032 1.0277 24 1 -0.3633 0.8883 -0.5166 25 1 -0.3633 -0.8916 -0.5110 26 1 3.6974 -3.3319 -0.0002 27 1 2.9626 -5.3004 2.0257 28 1 1.2702 -4.7677 1.8828 29 1 1.7200 -6.4325 1.4409 30 1 4.2881 -5.7944 0.0178 31 1 3.0391 -6.8420 -0.6971 32 1 3.2832 -4.5277 -2.2977 33 1 4.6213 -4.0606 -5.3173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716391639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = 41.468214 kcal Electronic energy + Delta-G solvation = -18322.407111 eV Core-core repulsion = 15318.143671 eV Total energy + Delta-G solvation = -3004.263439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95385 -39.52388 -36.34359 -33.77934 -33.28132 -31.61895 -30.15489 -28.19938 -26.94039 -25.76844 -23.25066 -22.46388 -20.65018 -20.30663 -18.49035 -17.62248 -16.95585 -16.12734 -15.97385 -14.90763 -14.76091 -14.33700 -14.00415 -13.75308 -13.38188 -13.07525 -13.03604 -12.57800 -12.39864 -12.31388 -12.24507 -11.71707 -11.54237 -10.99429 -10.87703 -10.57721 -10.33178 -10.12416 -9.94837 -9.83399 -9.81075 -9.72640 -9.00935 -8.91970 -7.04847 -5.85202 -3.15749 -0.25653 0.83130 1.47400 1.93026 3.02399 3.15468 3.38466 3.43755 3.45492 3.87371 4.50662 4.55724 4.75871 5.15924 5.27179 5.36678 5.46171 5.52817 5.54425 5.66315 5.88322 5.98055 6.06509 6.10715 6.28286 6.33016 6.56707 6.74530 7.50031 7.61693 7.65574 8.16968 8.32231 9.44289 9.98554 10.33620 11.36944 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.005588 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.224592 B = 5009.491097 C = 5892.575159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.096 3.904 3 N -0.255 5.255 4 N -0.262 5.262 5 S 0.433 5.567 6 C -0.288 4.288 7 C 0.604 3.396 8 O -0.522 6.522 9 N -0.701 5.701 10 C 0.134 3.866 11 H 0.092 0.908 12 C -0.158 4.158 13 C 0.143 3.857 14 N -0.733 5.733 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.403 0.597 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.385 0.615 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 5.251 12.428 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 N -0.121 5.121 4 N -0.242 5.242 5 S 0.570 5.430 6 C -0.429 4.429 7 C 0.387 3.613 8 O -0.400 6.400 9 N -0.351 5.351 10 C 0.030 3.970 11 H 0.110 0.890 12 C -0.217 4.217 13 C 0.015 3.985 14 N -0.378 5.378 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.238 0.762 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.219 0.781 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.178 6.058 12.367 14.133 hybrid contribution -0.114 -0.645 -0.888 1.104 sum -3.292 5.413 11.479 13.111 Atomic orbital electron populations 1.20500 0.83903 1.05024 1.04060 1.22917 1.00155 0.85105 0.96939 1.70603 0.97011 1.28068 1.16449 1.78791 1.09444 1.16175 1.19836 1.82745 1.09654 1.00844 1.49782 1.27819 0.98159 1.00218 1.16690 1.16402 0.86038 0.81921 0.76931 1.90777 1.15790 1.83060 1.50338 1.45907 1.09520 1.06266 1.73448 1.21371 0.99830 0.79084 0.96727 0.88961 1.22114 1.01832 1.01747 0.96028 1.21014 0.94004 0.95395 0.88106 1.42360 1.46700 1.35172 1.13535 1.19206 1.12714 1.08774 0.96910 0.91033 1.24758 1.00154 0.98102 0.97667 1.69658 1.44745 1.24913 1.18549 0.86187 0.81190 0.78496 0.80249 1.21664 1.21761 1.20702 0.89586 0.90044 0.87965 0.76175 0.92420 0.92265 0.91280 0.95580 0.94482 0.78085 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.89 36.00 0.36 -0.50 16 2 C 0.10 1.36 7.00 -82.84 -0.58 0.78 16 3 N -0.26 -3.84 11.54 33.42 0.39 -3.46 16 4 N -0.26 -3.86 12.51 60.35 0.75 -3.11 16 5 S 0.43 5.58 23.05 -107.50 -2.48 3.10 16 6 C -0.29 -4.15 6.81 -35.95 -0.24 -4.39 16 7 C 0.60 9.46 7.77 -12.63 -0.10 9.36 16 8 O -0.52 -9.09 14.56 5.26 0.08 -9.01 16 9 N -0.70 -10.56 4.51 -54.96 -0.25 -10.80 16 10 C 0.13 2.06 2.74 -67.93 -0.19 1.87 16 11 H 0.09 1.58 7.57 -51.93 -0.39 1.19 16 12 C -0.16 -1.93 9.49 37.16 0.35 -1.58 16 13 C 0.14 2.58 5.82 -4.04 -0.02 2.55 16 14 N -0.73 -17.26 5.43 -59.91 -0.33 -17.59 16 15 C -0.25 -6.50 9.99 -15.06 -0.15 -6.65 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 19 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.10 1.29 6.48 -51.93 -0.34 0.95 16 26 H 0.40 5.77 8.03 -40.82 -0.33 5.44 16 27 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.39 9.73 7.33 -40.82 -0.30 9.43 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -30.94 303.08 -6.10 -37.04 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.86 Total: 8.06 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.67 Total: 1.06 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 1.29 Total: -61.48 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -2.48 Total: 3.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.94 -6.10 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716391639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.503 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds