Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31240 * 124.05663 * 2 1 4 4 N 1.27334 * 120.03757 * 180.36890 * 3 2 1 5 5 S 1.56632 * 109.74142 * 359.69406 * 4 3 2 6 6 C 1.38243 * 124.05684 * 179.82009 * 2 1 3 7 7 C 1.47175 * 128.47671 * 359.97438 * 6 2 1 8 8 O 1.21623 * 119.99832 * 359.70140 * 7 6 2 9 9 N 1.34777 * 120.00199 * 179.70537 * 7 6 2 10 10 C 1.46498 * 119.99828 * 180.27666 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 N 1.46500 * 109.47226 * 304.99288 * 13 10 9 15 15 C 1.36937 * 119.99856 * 179.97438 * 14 13 10 16 16 H 1.07995 * 120.00314 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99459 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00523 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47270 * 89.99790 * 19 17 15 21 21 H 1.48499 * 109.46961 * 209.99813 * 19 17 15 22 22 H 1.48506 * 109.47250 * 329.99900 * 19 17 15 23 23 H 1.09001 * 109.46729 * 270.17878 * 1 2 3 24 24 H 1.08998 * 109.47160 * 30.18220 * 1 2 3 25 25 H 1.08998 * 109.47148 * 150.18300 * 1 2 3 26 26 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 27 27 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 28 28 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 29 29 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 30 30 H 1.08995 * 109.47415 * 64.99597 * 13 10 9 31 31 H 1.09008 * 109.47087 * 184.99936 * 13 10 9 32 32 H 0.96998 * 120.00120 * 0.02562 * 14 13 10 33 33 H 0.96991 * 119.99962 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 -0.0071 5 16 3.9366 -0.5096 -0.0069 6 6 2.2812 -1.1453 0.0036 7 6 1.8394 -2.5492 0.0085 8 8 0.6522 -2.8131 0.0153 9 7 2.7505 -3.5424 0.0055 10 6 2.3107 -4.9398 0.0043 11 1 1.3948 -5.0320 -0.5795 12 6 2.0468 -5.3926 1.4417 13 6 3.4007 -5.8169 -0.6147 14 7 3.7378 -5.3096 -1.9471 15 6 4.6954 -5.9385 -2.6972 16 1 5.2018 -6.8088 -2.3067 17 6 5.0150 -5.4574 -3.9595 18 7 4.3982 -4.3965 -4.4352 19 14 6.3208 -6.3158 -4.9830 20 1 5.6844 -7.3669 -5.8170 21 1 6.9911 -5.3245 -5.8624 22 1 7.3250 -6.9383 -4.0833 23 1 -0.3633 0.0032 1.0277 24 1 -0.3633 0.8883 -0.5166 25 1 -0.3633 -0.8916 -0.5110 26 1 3.6974 -3.3319 -0.0002 27 1 2.9626 -5.3004 2.0257 28 1 1.2702 -4.7677 1.8828 29 1 1.7200 -6.4325 1.4409 30 1 4.2881 -5.7944 0.0178 31 1 3.0391 -6.8420 -0.6971 32 1 3.2832 -4.5277 -2.2977 33 1 4.6213 -4.0606 -5.3173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716391639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = 19.070395 kcal Electronic energy + Delta-G solvation = -18323.378353 eV Core-core repulsion = 15318.143671 eV Total energy + Delta-G solvation = -3005.234682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.07065 -40.76380 -37.75691 -35.50614 -34.36842 -33.17105 -31.71193 -29.25749 -28.01656 -27.39664 -24.71148 -23.96694 -21.92568 -21.50933 -19.56689 -19.28789 -18.45594 -17.33232 -17.15732 -16.68466 -16.01124 -15.65471 -15.32122 -15.18928 -15.09763 -14.14231 -13.99751 -13.93962 -13.62866 -13.54065 -13.49467 -13.05340 -12.78635 -12.61811 -12.56249 -12.14495 -11.88485 -11.69090 -11.48243 -11.15484 -10.95150 -10.93795 -10.79499 -10.16808 -8.99747 -7.93261 -5.22359 -1.37866 -0.25045 0.37922 0.81257 1.50410 1.51161 1.59373 1.80874 1.96750 2.57564 2.80282 3.41815 3.47727 3.58879 3.86294 4.05373 4.24745 4.32399 4.52364 4.67779 4.75746 4.80525 4.88554 4.97280 5.10797 5.19082 5.34349 5.46649 5.54276 6.27408 6.29977 6.53940 6.95555 7.35484 8.08793 8.31601 9.29555 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.005588 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.224592 B = 5009.491097 C = 5892.575159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.096 3.904 3 N -0.272 5.272 4 N -0.282 5.282 5 S 0.486 5.514 6 C -0.310 4.310 7 C 0.605 3.395 8 O -0.544 6.544 9 N -0.699 5.699 10 C 0.141 3.859 11 H 0.071 0.929 12 C -0.148 4.148 13 C 0.142 3.858 14 N -0.745 5.745 15 C -0.241 4.241 16 H 0.081 0.919 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.970 3.030 20 H -0.292 1.292 21 H -0.300 1.300 22 H -0.266 1.266 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.407 0.593 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.374 0.626 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 4.536 13.634 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 N -0.137 5.137 4 N -0.263 5.263 5 S 0.622 5.378 6 C -0.451 4.451 7 C 0.389 3.611 8 O -0.423 6.423 9 N -0.350 5.350 10 C 0.037 3.963 11 H 0.089 0.911 12 C -0.207 4.207 13 C 0.016 3.984 14 N -0.388 5.388 15 C -0.372 4.372 16 H 0.099 0.901 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.219 1.219 21 H -0.227 1.227 22 H -0.191 1.191 23 H 0.122 0.878 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.243 0.757 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.206 0.794 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.558 5.314 13.624 14.846 hybrid contribution -0.294 -0.470 -1.199 1.321 sum -2.852 4.845 12.424 13.637 Atomic orbital electron populations 1.20577 0.82400 1.05099 1.05230 1.23304 1.01209 0.84765 0.95913 1.70651 0.97103 1.28543 1.17406 1.78635 1.09683 1.17625 1.20311 1.82506 1.08095 0.99247 1.47915 1.27782 0.99424 0.99774 1.18127 1.16497 0.85770 0.82388 0.76461 1.90762 1.16598 1.83506 1.51388 1.45888 1.09670 1.06182 1.73227 1.21264 0.97805 0.78916 0.98362 0.91095 1.22033 1.02608 1.02476 0.93535 1.21195 0.95413 0.95938 0.85886 1.42549 1.46109 1.34787 1.15364 1.19627 1.12275 1.08371 0.96957 0.90113 1.25505 1.02645 0.99160 0.99179 1.69812 1.46721 1.26764 1.18580 0.85196 0.79104 0.77100 0.78664 1.21925 1.22661 1.19078 0.87802 0.88489 0.89213 0.75745 0.90805 0.92463 0.89724 0.93833 0.93819 0.79439 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 9.89 71.24 0.70 -0.91 16 2 C 0.10 2.65 7.00 42.65 0.30 2.94 16 3 N -0.27 -7.98 11.54 -48.18 -0.56 -8.54 16 4 N -0.28 -8.08 12.51 37.02 0.46 -7.62 16 5 S 0.49 12.01 23.05 -56.49 -1.30 10.71 16 6 C -0.31 -8.75 6.81 24.62 0.17 -8.58 16 7 C 0.60 18.66 7.77 86.59 0.67 19.33 16 8 O -0.54 -18.83 14.56 -4.10 -0.06 -18.89 16 9 N -0.70 -20.40 4.51 -446.06 -2.01 -22.41 16 10 C 0.14 4.14 2.74 44.99 0.12 4.26 16 11 H 0.07 2.41 7.57 -2.39 -0.02 2.40 16 12 C -0.15 -3.24 9.49 71.98 0.68 -2.55 16 13 C 0.14 4.87 5.82 86.38 0.50 5.37 16 14 N -0.74 -34.52 5.43 -343.45 -1.87 -36.39 16 15 C -0.24 -12.49 9.99 84.03 0.84 -11.65 16 16 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.97 -57.22 13.06 21.65 0.28 -56.94 16 19 Si 0.97 44.36 29.55 68.60 2.03 46.39 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 2.25 6.48 -2.39 -0.02 2.23 16 26 H 0.41 11.15 8.03 -92.71 -0.74 10.41 16 27 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.37 18.93 7.33 -92.71 -0.68 18.25 16 33 H 0.25 14.45 8.31 -92.72 -0.77 13.68 16 Total: -1.00 -65.06 303.08 1.17 -63.89 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.27 Total: 25.09 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 4.46 Total: 4.71 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -3.69 Total: -131.90 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 12.01 SS G_CDS: -1.30 Total: 10.71 kcal Total: -65.06 1.17 -63.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716391639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.964 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds