Wall clock time and date at job start Mon Mar 30 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47252 * 2 1 4 4 C 1.53005 * 109.47006 * 240.00644 * 2 1 3 5 5 N 1.46498 * 109.47370 * 184.99722 * 4 2 1 6 6 C 1.34770 * 120.00119 * 179.97438 * 5 4 2 7 7 O 1.21609 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.47455 * 120.00135 * 179.97438 * 6 5 4 9 9 C 1.37976 * 124.15413 * 179.97438 * 8 6 5 10 10 S 1.72107 * 104.03294 * 179.97438 * 9 8 6 11 11 N 1.56411 * 96.15271 * 0.02562 * 10 9 8 12 12 N 1.27422 * 109.87165 * 359.74543 * 11 10 9 13 13 N 1.46490 * 109.47667 * 120.00687 * 2 1 3 14 14 C 1.46500 * 120.00108 * 59.99772 * 13 2 1 15 15 C 1.36940 * 120.00411 * 240.00091 * 13 2 1 16 16 H 1.08007 * 119.99707 * 20.35524 * 15 13 2 17 17 C 1.38810 * 120.00533 * 200.36213 * 15 13 2 18 18 N 1.31624 * 119.99730 * 14.99042 * 17 15 13 19 19 Si 1.86799 * 120.00260 * 194.99164 * 17 15 13 20 20 H 1.48497 * 109.46827 * 85.00115 * 19 17 15 21 21 H 1.48497 * 109.47150 * 204.99980 * 19 17 15 22 22 H 1.48495 * 109.47172 * 325.00625 * 19 17 15 23 23 H 1.09001 * 109.46943 * 299.98836 * 1 2 3 24 24 H 1.09004 * 109.47152 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47641 * 59.99651 * 1 2 3 26 26 H 1.09000 * 109.46828 * 304.99762 * 4 2 1 27 27 H 1.09004 * 109.47179 * 65.00005 * 4 2 1 28 28 H 0.97005 * 119.99856 * 0.02562 * 5 4 2 29 29 H 1.07996 * 127.98933 * 359.96343 * 9 8 6 30 30 H 1.08997 * 109.47218 * 95.11979 * 14 13 2 31 31 H 1.08999 * 109.47373 * 215.11670 * 14 13 2 32 32 H 1.08997 * 109.47409 * 335.12024 * 14 13 2 33 33 H 0.97004 * 119.99736 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.1728 -1.4289 -2.1910 7 8 3.5681 -1.8851 -3.1424 8 6 5.6424 -1.5342 -2.1323 9 6 6.4157 -2.1325 -3.1060 10 16 8.0257 -1.9657 -2.5212 11 7 7.6478 -1.2174 -1.2007 12 7 6.3849 -1.0605 -1.1381 13 7 2.0184 -0.6907 1.1960 14 6 1.6645 -2.0933 1.4277 15 6 2.8057 -0.0253 2.0975 16 1 2.8040 1.0545 2.1222 17 6 3.6060 -0.7385 2.9793 18 7 3.8413 -2.0162 2.7683 19 14 4.3492 0.1151 4.4654 20 1 3.3670 0.1140 5.5792 21 1 5.5770 -0.6056 4.8875 22 1 4.6940 1.5152 4.1110 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 1.6053 -1.7197 -1.2953 27 1 1.7515 -0.1581 -2.1371 28 1 3.9823 -0.4627 -0.4318 29 1 6.0866 -2.5981 -4.0232 30 1 2.4605 -2.7358 1.0514 31 1 1.5350 -2.2636 2.4965 32 1 0.7348 -2.3242 0.9077 33 1 4.4009 -2.5145 3.3843 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725174734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:46 Heat of formation + Delta-G solvation = 61.150989 kcal Electronic energy + Delta-G solvation = -18849.416171 eV Core-core repulsion = 15846.006241 eV Total energy + Delta-G solvation = -3003.409930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85580 -38.85701 -36.70142 -33.73568 -32.22006 -31.75882 -29.30059 -27.21775 -26.01188 -25.80358 -23.30723 -22.58399 -20.53824 -19.42454 -18.60841 -16.90169 -16.57827 -15.85033 -15.61543 -15.25566 -15.05072 -14.40216 -13.83131 -13.70762 -12.81573 -12.68020 -12.45633 -12.24038 -12.10802 -11.99212 -11.60194 -11.08930 -10.76101 -10.68809 -10.39279 -10.28085 -10.17612 -9.96842 -9.85389 -9.81387 -9.80665 -9.75896 -8.54381 -8.47057 -6.80315 -5.71124 -3.16075 0.15003 0.99859 1.63819 1.70150 3.41631 3.46453 3.48198 3.49347 3.62180 4.09272 4.50970 4.83186 5.08903 5.39436 5.42052 5.51569 5.59332 5.94892 6.07327 6.12250 6.29916 6.37979 6.68823 6.79213 6.87434 7.00533 7.40689 7.62909 7.74539 7.83218 8.11149 8.38108 8.59808 9.23698 9.87161 10.35050 11.32652 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.007204 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.823559 B = 3885.642951 C = 5273.663069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.070 0.930 4 C 0.104 3.896 5 N -0.675 5.675 6 C 0.596 3.404 7 O -0.550 6.550 8 C -0.011 4.011 9 C -0.240 4.240 10 S 0.427 5.573 11 N -0.283 5.283 12 N -0.190 5.190 13 N -0.594 5.594 14 C 0.163 3.837 15 C -0.264 4.264 16 H 0.069 0.931 17 C 0.009 3.991 18 N -0.898 5.898 19 Si 0.902 3.098 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.280 1.280 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.426 0.574 29 H 0.205 0.795 30 H 0.028 0.972 31 H 0.041 0.959 32 H -0.001 1.001 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 0.190 -11.623 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.088 0.912 4 C -0.022 4.022 5 N -0.325 5.325 6 C 0.376 3.624 7 O -0.429 6.429 8 C -0.159 4.159 9 C -0.397 4.397 10 S 0.563 5.437 11 N -0.264 5.264 12 N -0.061 5.061 13 N -0.316 5.316 14 C 0.019 3.981 15 C -0.393 4.393 16 H 0.087 0.913 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.732 3.268 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.205 1.205 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.265 0.735 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.295 0.174 -11.104 12.304 hybrid contribution -0.724 0.144 0.654 0.987 sum 4.571 0.319 -10.450 11.411 Atomic orbital electron populations 1.22165 0.97312 1.01484 1.00724 1.20652 0.92729 0.96000 0.85806 0.91187 1.22107 0.79113 1.01433 0.99525 1.45777 1.08474 1.55738 1.22488 1.16657 0.83049 0.79272 0.83436 1.90769 1.67947 1.49911 1.34234 1.22840 0.98381 1.02810 0.91855 1.28781 0.98961 1.05659 1.06337 1.81363 1.09205 1.41391 1.11747 1.78821 1.10466 1.19801 1.17272 1.71628 0.96487 1.16120 1.21818 1.43960 1.57771 1.09653 1.20264 1.20753 0.94035 0.84475 0.98876 1.19181 1.18115 0.90772 1.11261 0.91337 1.24918 0.97816 0.96094 1.00187 1.70091 1.39781 1.07707 1.36657 0.86316 0.78259 0.78857 0.83339 1.21675 1.21851 1.20544 0.92318 0.92930 0.93536 0.91934 0.92363 0.73516 0.77749 0.95332 0.93989 0.98251 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.18 37.15 0.34 -2.23 16 2 C 0.16 3.02 2.87 -67.94 -0.19 2.82 16 3 H 0.07 1.34 7.85 -51.93 -0.41 0.93 16 4 C 0.10 1.94 4.97 -4.04 -0.02 1.92 16 5 N -0.68 -13.54 5.38 -61.37 -0.33 -13.87 16 6 C 0.60 11.55 7.81 -12.51 -0.10 11.45 16 7 O -0.55 -11.25 16.80 5.27 0.09 -11.16 16 8 C -0.01 -0.20 6.87 -83.78 -0.58 -0.77 16 9 C -0.24 -3.08 11.21 30.64 0.34 -2.74 16 10 S 0.43 4.73 23.38 -107.50 -2.51 2.21 16 11 N -0.28 -4.66 12.49 60.35 0.75 -3.91 16 12 N -0.19 -3.58 11.24 32.74 0.37 -3.21 16 13 N -0.59 -13.93 2.29 -173.49 -0.40 -14.33 16 14 C 0.16 3.92 8.11 59.85 0.49 4.41 16 15 C -0.26 -6.88 9.34 -15.06 -0.14 -7.03 16 16 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 17 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 18 N -0.90 -25.54 10.67 55.49 0.59 -24.95 16 19 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.86 6.67 -51.93 -0.35 0.52 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.43 9.39 7.48 -40.82 -0.31 9.08 16 29 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 31 H 0.04 1.10 7.21 -51.93 -0.37 0.72 16 32 H 0.00 -0.02 6.44 -51.93 -0.33 -0.36 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -30.78 298.05 -5.72 -36.50 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.79 Total: 3.42 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.05 Total: 8.00 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.99 Total: -60.26 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -2.51 Total: 2.21 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.78 -5.72 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725174734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.653 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds