Wall clock time and date at job start Mon Mar 30 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47252 * 2 1 4 4 C 1.53005 * 109.47006 * 240.00644 * 2 1 3 5 5 N 1.46498 * 109.47370 * 184.99722 * 4 2 1 6 6 C 1.34770 * 120.00119 * 179.97438 * 5 4 2 7 7 O 1.21609 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.47455 * 120.00135 * 179.97438 * 6 5 4 9 9 C 1.37976 * 124.15413 * 179.97438 * 8 6 5 10 10 S 1.72107 * 104.03294 * 179.97438 * 9 8 6 11 11 N 1.56411 * 96.15271 * 0.02562 * 10 9 8 12 12 N 1.27422 * 109.87165 * 359.74543 * 11 10 9 13 13 N 1.46490 * 109.47667 * 120.00687 * 2 1 3 14 14 C 1.46500 * 120.00108 * 59.99772 * 13 2 1 15 15 C 1.36940 * 120.00411 * 240.00091 * 13 2 1 16 16 H 1.08007 * 119.99707 * 20.35524 * 15 13 2 17 17 C 1.38810 * 120.00533 * 200.36213 * 15 13 2 18 18 N 1.31624 * 119.99730 * 14.99042 * 17 15 13 19 19 Si 1.86799 * 120.00260 * 194.99164 * 17 15 13 20 20 H 1.48497 * 109.46827 * 85.00115 * 19 17 15 21 21 H 1.48497 * 109.47150 * 204.99980 * 19 17 15 22 22 H 1.48495 * 109.47172 * 325.00625 * 19 17 15 23 23 H 1.09001 * 109.46943 * 299.98836 * 1 2 3 24 24 H 1.09004 * 109.47152 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47641 * 59.99651 * 1 2 3 26 26 H 1.09000 * 109.46828 * 304.99762 * 4 2 1 27 27 H 1.09004 * 109.47179 * 65.00005 * 4 2 1 28 28 H 0.97005 * 119.99856 * 0.02562 * 5 4 2 29 29 H 1.07996 * 127.98933 * 359.96343 * 9 8 6 30 30 H 1.08997 * 109.47218 * 95.11979 * 14 13 2 31 31 H 1.08999 * 109.47373 * 215.11670 * 14 13 2 32 32 H 1.08997 * 109.47409 * 335.12024 * 14 13 2 33 33 H 0.97004 * 119.99736 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.1728 -1.4289 -2.1910 7 8 3.5681 -1.8851 -3.1424 8 6 5.6424 -1.5342 -2.1323 9 6 6.4157 -2.1325 -3.1060 10 16 8.0257 -1.9657 -2.5212 11 7 7.6478 -1.2174 -1.2007 12 7 6.3849 -1.0605 -1.1381 13 7 2.0184 -0.6907 1.1960 14 6 1.6645 -2.0933 1.4277 15 6 2.8057 -0.0253 2.0975 16 1 2.8040 1.0545 2.1222 17 6 3.6060 -0.7385 2.9793 18 7 3.8413 -2.0162 2.7683 19 14 4.3492 0.1151 4.4654 20 1 3.3670 0.1140 5.5792 21 1 5.5770 -0.6056 4.8875 22 1 4.6940 1.5152 4.1110 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 1.6053 -1.7197 -1.2953 27 1 1.7515 -0.1581 -2.1371 28 1 3.9823 -0.4627 -0.4318 29 1 6.0866 -2.5981 -4.0232 30 1 2.4605 -2.7358 1.0514 31 1 1.5350 -2.2636 2.4965 32 1 0.7348 -2.3242 0.9077 33 1 4.4009 -2.5145 3.3843 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725174734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:46 Heat of formation + Delta-G solvation = 38.814893 kcal Electronic energy + Delta-G solvation = -18850.384737 eV Core-core repulsion = 15846.006241 eV Total energy + Delta-G solvation = -3004.378496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.08461 -40.31865 -38.38637 -35.43587 -33.84583 -33.08096 -31.09212 -28.41977 -27.99223 -27.17535 -25.03761 -24.06325 -21.77387 -21.03687 -19.98240 -18.82988 -17.85464 -17.19871 -17.00872 -16.94853 -16.34799 -16.05536 -15.49749 -15.20086 -14.65380 -14.38895 -13.85850 -13.61686 -13.60152 -13.21020 -13.06678 -12.82826 -12.59235 -12.49730 -12.27051 -12.09475 -11.72311 -11.47611 -11.40088 -11.19408 -11.13734 -10.87227 -10.58215 -10.00307 -8.77225 -7.76685 -5.21457 -0.91463 -0.00950 0.38502 0.57909 1.48304 1.49458 1.56344 2.05833 2.25788 2.54331 2.83750 3.37845 3.65282 3.69606 3.92156 4.06587 4.36022 4.41316 4.62560 4.71007 4.82192 4.85677 5.11156 5.28808 5.32373 5.40803 5.58628 5.70271 5.77101 6.34915 6.37401 6.65419 7.06625 7.20363 7.92779 8.35946 9.25084 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.007204 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.823559 B = 3885.642951 C = 5273.663069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.154 3.846 3 H 0.072 0.928 4 C 0.109 3.891 5 N -0.686 5.686 6 C 0.594 3.406 7 O -0.566 6.566 8 C -0.046 4.046 9 C -0.233 4.233 10 S 0.559 5.441 11 N -0.338 5.338 12 N -0.236 5.236 13 N -0.602 5.602 14 C 0.182 3.818 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.043 4.043 18 N -0.927 5.927 19 Si 0.956 3.044 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.271 1.271 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.415 0.585 29 H 0.235 0.765 30 H -0.003 1.003 31 H 0.013 0.987 32 H 0.028 0.972 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 0.648 -13.359 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.090 0.910 4 C -0.016 4.016 5 N -0.334 5.334 6 C 0.376 3.624 7 O -0.447 6.447 8 C -0.194 4.194 9 C -0.390 4.390 10 S 0.694 5.306 11 N -0.319 5.319 12 N -0.105 5.105 13 N -0.326 5.326 14 C 0.037 3.963 15 C -0.387 4.387 16 H 0.091 0.909 17 C -0.239 4.239 18 N -0.573 5.573 19 Si 0.786 3.214 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.196 1.196 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.252 0.748 29 H 0.251 0.749 30 H 0.015 0.985 31 H 0.032 0.968 32 H 0.047 0.953 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.597 0.670 -12.860 14.041 hybrid contribution -0.719 -0.030 1.017 1.246 sum 4.877 0.640 -11.842 12.824 Atomic orbital electron populations 1.22042 0.94507 1.01852 1.02193 1.20886 0.94630 0.95536 0.84319 0.91011 1.22076 0.78603 1.00977 0.99955 1.45895 1.08967 1.56147 1.22375 1.16928 0.84155 0.78470 0.82837 1.90736 1.68735 1.50587 1.34603 1.22665 0.97624 1.05529 0.93596 1.29254 1.00037 1.03544 1.06159 1.80825 1.05775 1.36795 1.07184 1.78338 1.09863 1.22396 1.21263 1.71669 0.97478 1.17991 1.23393 1.44096 1.57493 1.09399 1.21566 1.20411 0.94176 0.84598 0.97102 1.19456 1.17131 0.91063 1.11091 0.90947 1.25533 0.99059 0.96687 1.02578 1.70253 1.40986 1.08859 1.37201 0.85450 0.76967 0.78215 0.80789 1.21599 1.23108 1.19556 0.92776 0.93071 0.90146 0.93026 0.90027 0.74813 0.74879 0.98484 0.96822 0.95336 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.18 71.98 0.66 -3.77 16 2 C 0.15 5.72 2.87 44.99 0.13 5.85 16 3 H 0.07 2.65 7.85 -2.39 -0.02 2.63 16 4 C 0.11 3.97 4.97 86.38 0.43 4.40 16 5 N -0.69 -27.78 5.38 -466.34 -2.51 -30.29 16 6 C 0.59 23.09 7.81 86.67 0.68 23.77 16 7 O -0.57 -22.83 16.80 -4.06 -0.07 -22.90 16 8 C -0.05 -1.58 6.87 41.36 0.28 -1.30 16 9 C -0.23 -5.45 11.21 67.76 0.76 -4.69 16 10 S 0.56 10.80 23.38 -56.49 -1.32 9.48 16 11 N -0.34 -10.90 12.49 37.02 0.46 -10.43 16 12 N -0.24 -9.01 11.24 -50.34 -0.57 -9.58 16 13 N -0.60 -28.32 2.29 -702.81 -1.61 -29.93 16 14 C 0.18 8.90 8.11 127.77 1.04 9.93 16 15 C -0.26 -13.49 9.34 84.03 0.79 -12.71 16 16 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 17 C -0.04 -2.35 5.06 84.86 0.43 -1.92 16 18 N -0.93 -54.42 10.67 21.65 0.23 -54.19 16 19 Si 0.96 45.65 29.58 68.60 2.03 47.67 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.56 6.67 -2.39 -0.02 1.54 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.98 7.84 -2.39 -0.02 1.96 16 27 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 28 H 0.41 18.80 7.48 -92.70 -0.69 18.11 16 29 H 0.23 3.88 8.06 -2.91 -0.02 3.85 16 30 H 0.00 -0.17 7.40 -2.39 -0.02 -0.19 16 31 H 0.01 0.71 7.21 -2.39 -0.02 0.69 16 32 H 0.03 1.20 6.44 -2.39 -0.02 1.18 16 33 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.77 298.05 2.29 -66.49 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.45 Total: 14.12 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 5.19 Total: 19.56 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -3.99 Total: -134.42 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.07 Total: -22.90 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 10.80 SS G_CDS: -1.32 Total: 9.48 kcal Total: -68.77 2.29 -66.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725174734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.300 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds