Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47433 * 2 1 4 4 C 1.53000 * 109.47007 * 119.99963 * 2 1 3 5 5 N 1.46502 * 109.47319 * 175.00068 * 4 2 1 6 6 C 1.34774 * 120.00214 * 180.02562 * 5 4 2 7 7 O 1.21606 * 119.99690 * 359.97438 * 6 5 4 8 8 C 1.47443 * 120.00149 * 180.02562 * 6 5 4 9 9 C 1.37982 * 124.15393 * 179.97438 * 8 6 5 10 10 S 1.72106 * 104.03075 * 179.97438 * 9 8 6 11 11 N 1.56396 * 96.15475 * 359.97438 * 10 9 8 12 12 N 1.27414 * 109.87730 * 359.74921 * 11 10 9 13 13 N 1.46497 * 109.47077 * 239.99771 * 2 1 3 14 14 C 1.46501 * 120.00392 * 299.99789 * 13 2 1 15 15 C 1.36937 * 120.00193 * 120.00293 * 13 2 1 16 16 H 1.07999 * 119.99664 * 328.01336 * 15 13 2 17 17 C 1.38815 * 120.00405 * 148.00778 * 15 13 2 18 18 N 1.31609 * 120.00239 * 152.44630 * 17 15 13 19 19 Si 1.86804 * 119.99702 * 332.44592 * 17 15 13 20 20 H 1.48491 * 109.47218 * 95.36273 * 19 17 15 21 21 H 1.48501 * 109.46726 * 215.36699 * 19 17 15 22 22 H 1.48499 * 109.47117 * 335.35950 * 19 17 15 23 23 H 1.09005 * 109.47019 * 60.00342 * 1 2 3 24 24 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47216 * 300.00433 * 1 2 3 26 26 H 1.09006 * 109.46780 * 294.99969 * 4 2 1 27 27 H 1.08999 * 109.47127 * 54.99968 * 4 2 1 28 28 H 0.97001 * 119.99777 * 359.97438 * 5 4 2 29 29 H 1.07998 * 127.98729 * 359.95473 * 9 8 6 30 30 H 1.09000 * 109.47090 * 95.28417 * 14 13 2 31 31 H 1.08990 * 109.47735 * 215.29029 * 14 13 2 32 32 H 1.09000 * 109.46706 * 335.29479 * 14 13 2 33 33 H 0.96999 * 120.00382 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5682 -1.8854 3.1420 8 6 5.6424 -1.5345 2.1321 9 6 6.4158 -2.1320 3.1061 10 16 8.0256 -1.9670 2.5203 11 7 7.6476 -1.2202 1.1992 12 7 6.3839 -1.0718 1.1318 13 7 2.0183 -0.6906 -1.1961 14 6 1.6645 -2.0932 -1.4280 15 6 2.8056 -0.0252 -2.0975 16 1 2.6695 1.0346 -2.2543 17 6 3.7787 -0.7129 -2.8097 18 7 4.1516 -0.2842 -3.9969 19 14 4.5589 -2.2468 -2.0831 20 1 3.8519 -3.4498 -2.5908 21 1 5.9890 -2.3093 -2.4783 22 1 4.4563 -2.2003 -0.6024 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7515 -0.1582 2.1370 27 1 1.6053 -1.7198 1.2952 28 1 3.9824 -0.4628 0.4317 29 1 6.0869 -2.5959 4.0243 30 1 0.7908 -2.1449 -2.0777 31 1 2.5012 -2.6054 -1.9028 32 1 1.4379 -2.5729 -0.4758 33 1 4.8318 -0.7645 -4.4944 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725174763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = 69.895465 kcal Electronic energy + Delta-G solvation = -19110.972919 eV Core-core repulsion = 16107.942177 eV Total energy + Delta-G solvation = -3003.030741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00426 -39.04683 -36.96471 -33.86055 -32.33016 -31.91244 -30.17445 -27.36040 -26.19258 -25.95924 -23.48545 -22.74096 -20.68464 -19.66238 -18.73360 -16.99269 -16.71430 -16.01979 -15.78996 -15.59870 -15.26886 -14.76249 -14.03580 -13.84437 -13.06960 -12.67633 -12.57604 -12.29680 -12.27882 -12.15404 -12.11902 -11.92515 -11.22706 -10.79010 -10.52698 -10.29220 -10.14149 -10.09939 -10.00392 -9.97658 -9.91073 -9.50774 -8.60349 -8.47512 -6.96075 -6.02618 -3.36381 0.02791 0.87987 1.51888 1.54858 3.31116 3.35073 3.43208 3.56234 3.57745 3.96010 4.53897 4.69838 4.90534 4.98001 5.26915 5.36688 5.43631 5.74915 5.93573 6.00865 6.07189 6.24078 6.30656 6.53725 6.65119 6.72877 6.75827 6.86497 7.48724 7.92637 7.97777 8.32418 8.41566 8.94130 9.69957 10.07388 11.12674 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.008058 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.209012 B = 3473.760967 C = 4568.773159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.079 0.921 4 C 0.099 3.901 5 N -0.682 5.682 6 C 0.596 3.404 7 O -0.546 6.546 8 C -0.015 4.015 9 C -0.239 4.239 10 S 0.435 5.565 11 N -0.283 5.283 12 N -0.196 5.196 13 N -0.602 5.602 14 C 0.113 3.887 15 C -0.279 4.279 16 H 0.081 0.919 17 C 0.041 3.959 18 N -0.890 5.890 19 Si 0.874 3.126 20 H -0.296 1.296 21 H -0.305 1.305 22 H -0.257 1.257 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.424 0.576 29 H 0.207 0.793 30 H 0.018 0.982 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -3.409 14.850 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.098 0.902 4 C -0.026 4.026 5 N -0.333 5.333 6 C 0.377 3.623 7 O -0.424 6.424 8 C -0.163 4.163 9 C -0.397 4.397 10 S 0.571 5.429 11 N -0.263 5.263 12 N -0.066 5.066 13 N -0.326 5.326 14 C -0.032 4.032 15 C -0.407 4.407 16 H 0.099 0.901 17 C -0.160 4.160 18 N -0.530 5.530 19 Si 0.705 3.295 20 H -0.225 1.225 21 H -0.234 1.234 22 H -0.181 1.181 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.264 0.736 29 H 0.224 0.776 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.771 -3.300 14.284 15.417 hybrid contribution -0.624 -1.122 0.458 1.364 sum 4.147 -4.422 14.742 15.940 Atomic orbital electron populations 1.22133 0.96736 1.01446 1.01155 1.20793 0.92979 0.96521 0.84884 0.90239 1.22141 0.78967 1.01575 0.99952 1.45987 1.08589 1.56018 1.22677 1.16645 0.83095 0.79274 0.83333 1.90776 1.67918 1.49755 1.33983 1.22834 0.98410 1.03193 0.91839 1.28806 0.99059 1.05454 1.06348 1.81396 1.09044 1.40835 1.11663 1.78806 1.10288 1.19745 1.17471 1.71641 0.96616 1.16274 1.22093 1.44125 1.58343 1.08890 1.21266 1.21275 0.98316 0.85921 0.97662 1.18760 1.11490 0.95237 1.15213 0.90140 1.25296 0.97215 0.97680 0.95827 1.69927 1.31692 1.41587 1.09806 0.87104 0.77685 0.83240 0.81440 1.22504 1.23361 1.18114 0.91966 0.93138 0.93267 0.91739 0.91826 0.73572 0.77608 0.96402 0.94384 0.94888 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.19 37.16 0.34 -2.04 16 2 C 0.16 2.84 2.87 -67.93 -0.19 2.65 16 3 H 0.08 1.47 7.89 -51.93 -0.41 1.06 16 4 C 0.10 1.72 4.93 -4.04 -0.02 1.70 16 5 N -0.68 -13.03 4.54 -61.37 -0.28 -13.31 16 6 C 0.60 11.07 7.81 -12.51 -0.10 10.98 16 7 O -0.55 -10.63 16.80 5.27 0.09 -10.55 16 8 C -0.02 -0.26 6.87 -83.78 -0.58 -0.83 16 9 C -0.24 -2.94 11.21 30.64 0.34 -2.59 16 10 S 0.43 4.66 23.38 -107.50 -2.51 2.14 16 11 N -0.28 -4.60 12.49 60.35 0.75 -3.85 16 12 N -0.20 -3.63 11.24 32.73 0.37 -3.26 16 13 N -0.60 -13.43 1.93 -173.49 -0.33 -13.77 16 14 C 0.11 2.43 8.77 59.85 0.53 2.96 16 15 C -0.28 -7.44 9.56 -15.06 -0.14 -7.58 16 16 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 17 C 0.04 1.17 5.27 -17.43 -0.09 1.08 16 18 N -0.89 -26.97 13.97 55.49 0.78 -26.19 16 19 Si 0.87 22.27 24.76 -169.99 -4.21 18.06 16 20 H -0.30 -7.60 6.61 56.52 0.37 -7.23 16 21 H -0.31 -8.24 7.11 56.52 0.40 -7.83 16 22 H -0.26 -6.08 5.43 56.52 0.31 -5.77 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.76 7.67 -51.93 -0.40 0.36 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.12 6.86 -51.93 -0.36 0.76 16 28 H 0.42 8.90 6.28 -40.82 -0.26 8.65 16 29 H 0.21 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.91 2.75 -51.93 -0.14 0.76 16 32 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 289.73 15.07 4.37 4.37 Total: -1.00 -32.40 289.73 -4.60 -37.00 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.70 Total: 3.06 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 0.09 Total: 6.30 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 1.28 Total: -60.38 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.21 Total: 18.06 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -2.51 Total: 2.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.40 -4.60 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725174763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.891 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds