Wall clock time and date at job start Mon Mar 30 2020 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47433 * 2 1 4 4 C 1.53000 * 109.47007 * 119.99963 * 2 1 3 5 5 N 1.46502 * 109.47319 * 175.00068 * 4 2 1 6 6 C 1.34774 * 120.00214 * 180.02562 * 5 4 2 7 7 O 1.21606 * 119.99690 * 359.97438 * 6 5 4 8 8 C 1.47443 * 120.00149 * 180.02562 * 6 5 4 9 9 C 1.37982 * 124.15393 * 179.97438 * 8 6 5 10 10 S 1.72106 * 104.03075 * 179.97438 * 9 8 6 11 11 N 1.56396 * 96.15475 * 359.97438 * 10 9 8 12 12 N 1.27414 * 109.87730 * 359.74921 * 11 10 9 13 13 N 1.46497 * 109.47077 * 239.99771 * 2 1 3 14 14 C 1.46501 * 120.00392 * 299.99789 * 13 2 1 15 15 C 1.36937 * 120.00193 * 120.00293 * 13 2 1 16 16 H 1.07999 * 119.99664 * 328.01336 * 15 13 2 17 17 C 1.38815 * 120.00405 * 148.00778 * 15 13 2 18 18 N 1.31609 * 120.00239 * 152.44630 * 17 15 13 19 19 Si 1.86804 * 119.99702 * 332.44592 * 17 15 13 20 20 H 1.48491 * 109.47218 * 95.36273 * 19 17 15 21 21 H 1.48501 * 109.46726 * 215.36699 * 19 17 15 22 22 H 1.48499 * 109.47117 * 335.35950 * 19 17 15 23 23 H 1.09005 * 109.47019 * 60.00342 * 1 2 3 24 24 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47216 * 300.00433 * 1 2 3 26 26 H 1.09006 * 109.46780 * 294.99969 * 4 2 1 27 27 H 1.08999 * 109.47127 * 54.99968 * 4 2 1 28 28 H 0.97001 * 119.99777 * 359.97438 * 5 4 2 29 29 H 1.07998 * 127.98729 * 359.95473 * 9 8 6 30 30 H 1.09000 * 109.47090 * 95.28417 * 14 13 2 31 31 H 1.08990 * 109.47735 * 215.29029 * 14 13 2 32 32 H 1.09000 * 109.46706 * 335.29479 * 14 13 2 33 33 H 0.96999 * 120.00382 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5682 -1.8854 3.1420 8 6 5.6424 -1.5345 2.1321 9 6 6.4158 -2.1320 3.1061 10 16 8.0256 -1.9670 2.5203 11 7 7.6476 -1.2202 1.1992 12 7 6.3839 -1.0718 1.1318 13 7 2.0183 -0.6906 -1.1961 14 6 1.6645 -2.0932 -1.4280 15 6 2.8056 -0.0252 -2.0975 16 1 2.6695 1.0346 -2.2543 17 6 3.7787 -0.7129 -2.8097 18 7 4.1516 -0.2842 -3.9969 19 14 4.5589 -2.2468 -2.0831 20 1 3.8519 -3.4498 -2.5908 21 1 5.9890 -2.3093 -2.4783 22 1 4.4563 -2.2003 -0.6024 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7515 -0.1582 2.1370 27 1 1.6053 -1.7198 1.2952 28 1 3.9824 -0.4628 0.4317 29 1 6.0869 -2.5959 4.0243 30 1 0.7908 -2.1449 -2.0777 31 1 2.5012 -2.6054 -1.9028 32 1 1.4379 -2.5729 -0.4758 33 1 4.8318 -0.7645 -4.4944 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725174763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:48 Heat of formation + Delta-G solvation = 45.115902 kcal Electronic energy + Delta-G solvation = -19112.047441 eV Core-core repulsion = 16107.942177 eV Total energy + Delta-G solvation = -3004.105264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16885 -40.41925 -38.57661 -35.47829 -34.03383 -33.20474 -31.86142 -28.49206 -28.06206 -27.23123 -25.21949 -24.13731 -21.85253 -21.17621 -20.03635 -18.95860 -17.95049 -17.51381 -17.22352 -17.05820 -16.44057 -16.33414 -15.56327 -15.29517 -14.75932 -14.44557 -14.23368 -13.92984 -13.69247 -13.65707 -13.34646 -13.10787 -12.71507 -12.47084 -12.29057 -12.04120 -11.71624 -11.50853 -11.42001 -11.25248 -11.19530 -10.93557 -10.58991 -10.03628 -8.87483 -8.21729 -5.48939 -0.97250 -0.06324 0.30607 0.51265 1.28132 1.46814 1.52554 2.00598 2.16927 2.42193 2.77098 3.03435 3.35707 3.62374 3.85513 3.99891 4.30954 4.33509 4.50632 4.55872 4.72481 4.79905 4.85462 5.02266 5.05765 5.27137 5.33994 5.52093 5.90820 6.17475 6.28112 6.56599 6.94779 6.99856 7.65026 8.04469 8.97856 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.008058 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.209012 B = 3473.760967 C = 4568.773159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.154 3.846 3 H 0.071 0.929 4 C 0.105 3.895 5 N -0.694 5.694 6 C 0.596 3.404 7 O -0.559 6.559 8 C -0.050 4.050 9 C -0.229 4.229 10 S 0.561 5.439 11 N -0.341 5.341 12 N -0.243 5.243 13 N -0.610 5.610 14 C 0.113 3.887 15 C -0.251 4.251 16 H 0.052 0.948 17 C -0.012 4.012 18 N -0.940 5.940 19 Si 0.933 3.067 20 H -0.298 1.298 21 H -0.331 1.331 22 H -0.233 1.233 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.414 0.586 29 H 0.238 0.762 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -4.708 17.975 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.047 3.953 3 H 0.090 0.910 4 C -0.020 4.020 5 N -0.344 5.344 6 C 0.378 3.622 7 O -0.439 6.439 8 C -0.198 4.198 9 C -0.386 4.386 10 S 0.696 5.304 11 N -0.322 5.322 12 N -0.112 5.112 13 N -0.334 5.334 14 C -0.031 4.031 15 C -0.380 4.380 16 H 0.070 0.930 17 C -0.209 4.209 18 N -0.585 5.585 19 Si 0.766 3.234 20 H -0.228 1.228 21 H -0.261 1.261 22 H -0.156 1.156 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.252 0.748 29 H 0.254 0.746 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.606 -4.602 17.465 18.639 hybrid contribution -0.532 -0.695 -0.353 0.943 sum 4.074 -5.296 17.112 18.370 Atomic orbital electron populations 1.22022 0.93969 1.02280 1.02209 1.20963 0.94861 0.95749 0.83698 0.91050 1.22127 0.78273 1.01747 0.99876 1.46132 1.09228 1.56443 1.22614 1.16851 0.83985 0.78558 0.82779 1.90751 1.68562 1.50342 1.34204 1.22729 0.97846 1.05776 0.93479 1.29286 0.99880 1.03220 1.06179 1.80894 1.05959 1.36349 1.07219 1.78338 1.09805 1.22451 1.21581 1.71676 0.97576 1.18076 1.23831 1.44195 1.57754 1.09281 1.22214 1.21279 0.97465 0.85225 0.99158 1.18663 1.10614 0.94119 1.14631 0.93047 1.25773 0.98373 1.00569 0.96147 1.70035 1.33245 1.43746 1.11441 0.86163 0.75021 0.80258 0.81980 1.22750 1.26125 1.15631 0.93192 0.92380 0.89986 0.89461 0.91569 0.74839 0.74565 0.95876 0.96637 0.91934 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.19 71.98 0.66 -3.39 16 2 C 0.15 5.33 2.87 44.99 0.13 5.46 16 3 H 0.07 2.59 7.89 -2.39 -0.02 2.57 16 4 C 0.10 3.36 4.93 86.38 0.43 3.78 16 5 N -0.69 -25.64 4.54 -466.35 -2.12 -27.76 16 6 C 0.60 21.14 7.81 86.67 0.68 21.81 16 7 O -0.56 -20.42 16.80 -4.05 -0.07 -20.48 16 8 C -0.05 -1.61 6.87 41.36 0.28 -1.32 16 9 C -0.23 -4.84 11.21 67.76 0.76 -4.08 16 10 S 0.56 10.13 23.38 -56.49 -1.32 8.81 16 11 N -0.34 -10.69 12.49 37.02 0.46 -10.23 16 12 N -0.24 -8.85 11.24 -50.35 -0.57 -9.42 16 13 N -0.61 -26.74 1.93 -702.80 -1.35 -28.09 16 14 C 0.11 4.69 8.77 127.77 1.12 5.81 16 15 C -0.25 -13.60 9.56 84.03 0.80 -12.80 16 16 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 17 C -0.01 -0.67 5.27 84.86 0.45 -0.22 16 18 N -0.94 -59.24 13.97 21.65 0.30 -58.94 16 19 Si 0.93 47.69 24.76 68.60 1.70 49.38 16 20 H -0.30 -15.12 6.61 99.48 0.66 -14.46 16 21 H -0.33 -18.17 7.11 99.48 0.71 -17.46 16 22 H -0.23 -10.85 5.43 99.48 0.54 -10.31 16 23 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.06 1.54 7.67 -2.39 -0.02 1.52 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.07 2.11 6.86 -2.39 -0.02 2.09 16 28 H 0.41 17.24 6.28 -92.71 -0.58 16.66 16 29 H 0.24 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.02 0.72 2.75 -2.39 -0.01 0.72 16 32 H 0.06 2.21 6.54 -2.39 -0.02 2.20 16 33 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -72.98 289.73 2.70 -70.28 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.35 Total: 11.41 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 5.31 Total: 15.04 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -3.27 Total: -134.44 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.07 Total: -20.48 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.70 Total: 49.38 kcal Atomic # 16 Polarization: 10.13 SS G_CDS: -1.32 Total: 8.81 kcal Total: -72.98 2.70 -70.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725174763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.400 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds