Wall clock time and date at job start Mon Mar 30 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21607 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.47444 * 120.00148 * 180.02562 * 7 6 5 10 10 C 1.37982 * 124.15626 * 180.02562 * 9 7 6 11 11 S 1.72110 * 104.03132 * 179.97438 * 10 9 7 12 12 N 1.56400 * 96.15421 * 359.97438 * 11 10 9 13 13 N 1.27415 * 109.88037 * 359.75242 * 12 11 10 14 14 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 15 15 C 1.36935 * 120.00239 * 275.00034 * 14 3 2 16 16 H 1.08004 * 120.00069 * 0.02562 * 15 14 3 17 17 C 1.38811 * 120.00368 * 180.02562 * 15 14 3 18 18 N 1.31624 * 119.99540 * 359.72375 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72253 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72375 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72186 * 19 17 15 23 23 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 24 24 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 27 27 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 28 28 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 29 29 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 30 30 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 31 31 H 1.07992 * 127.98708 * 359.95374 * 10 9 7 32 32 H 0.97004 * 119.99747 * 95.00774 * 14 3 2 33 33 H 0.97000 * 120.00481 * 0.27542 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1653 2.1460 -0.2597 9 6 5.8871 4.4443 0.0341 10 6 7.2202 4.7934 -0.0360 11 16 7.2151 6.5026 0.1653 12 7 5.6649 6.6497 0.3111 13 7 5.1105 5.5063 0.2175 14 7 1.6524 2.0974 1.2518 15 6 0.4156 2.6734 1.3688 16 1 -0.2743 2.6446 0.5384 17 6 0.0486 3.2945 2.5548 18 7 0.8874 3.3249 3.5687 19 14 -1.6388 4.0796 2.7147 20 1 -1.7858 4.6654 4.0714 21 1 -1.7857 5.1494 1.6951 22 1 -2.6865 3.0484 2.5046 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9954 0.8311 0.6659 29 1 3.8498 1.0377 -1.0961 30 1 3.4410 3.5483 0.1315 31 1 8.0705 4.1440 -0.1829 32 1 2.2720 2.1231 1.9978 33 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732209948.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:12 Heat of formation + Delta-G solvation = 41.244053 kcal Electronic energy + Delta-G solvation = -18345.201529 eV Core-core repulsion = 15340.928369 eV Total energy + Delta-G solvation = -3004.273160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09842 -39.14818 -36.85971 -33.95316 -32.62972 -32.16990 -29.64458 -28.13989 -26.93264 -24.31049 -23.15076 -22.10253 -20.77573 -20.20612 -18.99707 -17.46173 -16.86086 -16.09432 -15.86624 -15.42185 -15.13116 -14.56952 -14.20604 -13.62419 -13.55479 -13.20045 -12.80957 -12.68124 -12.20273 -12.06094 -11.65320 -11.01496 -10.77594 -10.62525 -10.40691 -10.35979 -10.18709 -10.12811 -10.06653 -10.02729 -9.86680 -9.18382 -8.93917 -8.83418 -7.07914 -6.08923 -3.10614 -0.05578 0.79462 1.42382 1.43994 3.19405 3.28422 3.52495 3.55561 3.72757 3.82858 4.60222 4.66407 4.86232 5.23357 5.30802 5.35792 5.55576 5.81094 5.87479 5.90094 6.02320 6.30173 6.42812 6.50029 6.53526 6.71203 6.93678 7.22131 7.36743 7.75360 7.80680 8.24718 8.74793 9.18986 10.06014 10.20101 11.38147 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.005496 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.578778 B = 5093.739735 C = 6405.378206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.056 0.944 5 C 0.111 3.889 6 N -0.690 5.690 7 C 0.598 3.402 8 O -0.540 6.540 9 C -0.017 4.017 10 C -0.238 4.238 11 S 0.443 5.557 12 N -0.283 5.283 13 N -0.199 5.199 14 N -0.732 5.732 15 C -0.328 4.328 16 H 0.068 0.932 17 C -0.042 4.042 18 N -0.941 5.941 19 Si 1.076 2.924 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.296 1.296 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.421 0.579 31 H 0.207 0.793 32 H 0.368 0.632 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 2.312 -8.946 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.013 4.013 6 N -0.341 5.341 7 C 0.379 3.621 8 O -0.417 6.417 9 C -0.165 4.165 10 C -0.396 4.396 11 S 0.579 5.421 12 N -0.264 5.264 13 N -0.070 5.070 14 N -0.375 5.375 15 C -0.459 4.459 16 H 0.086 0.914 17 C -0.240 4.240 18 N -0.586 5.586 19 Si 0.907 3.093 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.223 1.223 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.259 0.741 31 H 0.224 0.776 32 H 0.201 0.799 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.332 4.339 -7.950 14.507 hybrid contribution 1.010 -2.156 -0.931 2.557 sum 12.342 2.183 -8.881 15.361 Atomic orbital electron populations 1.21761 0.95504 0.99610 1.03439 1.22054 0.97207 0.98092 0.99975 1.20512 0.89451 0.92964 0.91313 0.92557 1.21837 0.96079 0.81797 1.01586 1.45899 1.06498 1.11645 1.70008 1.16667 0.83145 0.84541 0.77775 1.90802 1.56367 1.43643 1.50908 1.22785 0.90095 0.96298 1.07281 1.28832 1.01611 1.03396 1.05745 1.81446 1.11873 0.99329 1.49410 1.78761 1.05834 1.19470 1.22317 1.71610 1.30364 0.93155 1.11852 1.42448 1.16894 1.67028 1.11169 1.19969 0.92491 1.32446 1.00995 0.91430 1.25695 1.05695 1.00264 0.92337 1.70883 1.08374 1.47340 1.31953 0.83297 0.74309 0.75887 0.75817 1.21167 1.22260 1.22317 0.89552 0.94067 0.94863 0.93734 0.92651 0.91413 0.91208 0.74100 0.77575 0.79886 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.15 0.34 -2.30 16 2 C -0.13 -2.29 5.61 -26.73 -0.15 -2.44 16 3 C 0.17 3.15 2.59 -67.93 -0.18 2.97 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.88 5.23 -4.04 -0.02 1.85 16 6 N -0.69 -12.06 5.38 -61.38 -0.33 -12.39 16 7 C 0.60 10.18 7.81 -12.51 -0.10 10.09 16 8 O -0.54 -9.94 16.80 5.27 0.09 -9.85 16 9 C -0.02 -0.26 6.87 -83.78 -0.58 -0.83 16 10 C -0.24 -2.61 11.21 30.64 0.34 -2.26 16 11 S 0.44 4.13 23.38 -107.50 -2.51 1.61 16 12 N -0.28 -4.09 12.49 60.35 0.75 -3.34 16 13 N -0.20 -3.28 11.24 32.74 0.37 -2.91 16 14 N -0.73 -16.93 4.50 -53.43 -0.24 -17.17 16 15 C -0.33 -8.58 7.75 -15.06 -0.12 -8.70 16 16 H 0.07 1.75 7.32 -52.48 -0.38 1.36 16 17 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 18 N -0.94 -28.44 13.70 55.49 0.76 -27.68 16 19 Si 1.08 25.54 29.92 -169.99 -5.09 20.46 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.42 7.94 7.72 -40.82 -0.32 7.63 16 31 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.37 9.08 6.63 -40.82 -0.27 8.81 16 33 H 0.25 7.63 6.77 -40.82 -0.28 7.36 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -31.68 299.91 -5.96 -37.64 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -3.73 Total: 11.99 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.55 Total: -2.88 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 1.31 Total: -63.48 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.09 Total: 20.46 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -2.51 Total: 1.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.68 -5.96 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732209948.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.886 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds