Wall clock time and date at job start Mon Mar 30 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21607 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.47444 * 120.00148 * 180.02562 * 7 6 5 10 10 C 1.37982 * 124.15626 * 180.02562 * 9 7 6 11 11 S 1.72110 * 104.03132 * 179.97438 * 10 9 7 12 12 N 1.56400 * 96.15421 * 359.97438 * 11 10 9 13 13 N 1.27415 * 109.88037 * 359.75242 * 12 11 10 14 14 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 15 15 C 1.36935 * 120.00239 * 275.00034 * 14 3 2 16 16 H 1.08004 * 120.00069 * 0.02562 * 15 14 3 17 17 C 1.38811 * 120.00368 * 180.02562 * 15 14 3 18 18 N 1.31624 * 119.99540 * 359.72375 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72253 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72375 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72186 * 19 17 15 23 23 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 24 24 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 27 27 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 28 28 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 29 29 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 30 30 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 31 31 H 1.07992 * 127.98708 * 359.95374 * 10 9 7 32 32 H 0.97004 * 119.99747 * 95.00774 * 14 3 2 33 33 H 0.97000 * 120.00481 * 0.27542 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1653 2.1460 -0.2597 9 6 5.8871 4.4443 0.0341 10 6 7.2202 4.7934 -0.0360 11 16 7.2151 6.5026 0.1653 12 7 5.6649 6.6497 0.3111 13 7 5.1105 5.5063 0.2175 14 7 1.6524 2.0974 1.2518 15 6 0.4156 2.6734 1.3688 16 1 -0.2743 2.6446 0.5384 17 6 0.0486 3.2945 2.5548 18 7 0.8874 3.3249 3.5687 19 14 -1.6388 4.0796 2.7147 20 1 -1.7858 4.6654 4.0714 21 1 -1.7857 5.1494 1.6951 22 1 -2.6865 3.0484 2.5046 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9954 0.8311 0.6659 29 1 3.8498 1.0377 -1.0961 30 1 3.4410 3.5483 0.1315 31 1 8.0705 4.1440 -0.1829 32 1 2.2720 2.1231 1.9978 33 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732209948.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:12 Heat of formation + Delta-G solvation = 17.083908 kcal Electronic energy + Delta-G solvation = -18346.249191 eV Core-core repulsion = 15340.928369 eV Total energy + Delta-G solvation = -3005.320822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17012 -40.44954 -38.44657 -35.52457 -34.36260 -33.22713 -31.35496 -29.64656 -28.04649 -25.84654 -24.91513 -23.42064 -21.94042 -21.63673 -20.23370 -19.41245 -18.01212 -17.23245 -17.10268 -16.74673 -16.54534 -16.07788 -15.69977 -15.45931 -14.98187 -14.70460 -14.27041 -13.68235 -13.66816 -13.22986 -13.08512 -12.74296 -12.58138 -12.13475 -12.00549 -11.83682 -11.57051 -11.48255 -11.27616 -11.20398 -11.18460 -10.93208 -10.87385 -10.20439 -9.06969 -8.27031 -5.21772 -0.96495 -0.06221 0.28487 0.52032 1.60236 1.69357 1.84331 1.95329 2.05990 2.72654 2.75754 3.49174 3.60761 3.71995 3.79644 3.86245 4.26985 4.32113 4.39642 4.48928 4.63391 4.77096 5.01222 5.03838 5.13520 5.30030 5.47540 5.66057 5.73049 6.20524 6.52083 6.58087 6.90743 7.15367 8.05351 8.17422 9.23582 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.005496 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.578778 B = 5093.739735 C = 6405.378206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.055 0.945 5 C 0.119 3.881 6 N -0.697 5.697 7 C 0.599 3.401 8 O -0.558 6.558 9 C -0.049 4.049 10 C -0.232 4.232 11 S 0.569 5.431 12 N -0.337 5.337 13 N -0.241 5.241 14 N -0.739 5.739 15 C -0.304 4.304 16 H 0.072 0.928 17 C -0.106 4.106 18 N -0.980 5.980 19 Si 1.118 2.882 20 H -0.300 1.300 21 H -0.281 1.281 22 H -0.279 1.279 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.413 0.587 31 H 0.235 0.765 32 H 0.358 0.642 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.699 2.317 -10.571 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.073 0.927 5 C -0.005 4.005 6 N -0.346 5.346 7 C 0.381 3.619 8 O -0.437 6.437 9 C -0.197 4.197 10 C -0.389 4.389 11 S 0.704 5.296 12 N -0.318 5.318 13 N -0.110 5.110 14 N -0.382 5.382 15 C -0.435 4.435 16 H 0.090 0.910 17 C -0.297 4.297 18 N -0.629 5.629 19 Si 0.945 3.055 20 H -0.227 1.227 21 H -0.208 1.208 22 H -0.205 1.205 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.250 0.750 31 H 0.252 0.748 32 H 0.189 0.811 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.528 4.313 -9.635 16.383 hybrid contribution 0.834 -2.128 -0.532 2.347 sum 13.362 2.185 -10.167 16.932 Atomic orbital electron populations 1.21686 0.95989 1.00605 1.01705 1.21963 0.96659 0.96817 1.01309 1.20689 0.90859 0.93525 0.89053 0.92748 1.21769 0.94441 0.81803 1.02497 1.45944 1.06851 1.11437 1.70374 1.16900 0.82637 0.85444 0.76899 1.90773 1.56523 1.44509 1.51903 1.22601 0.91686 0.95332 1.10058 1.29289 1.00883 1.05430 1.03298 1.80951 1.07174 0.96415 1.45102 1.78310 1.09796 1.19445 1.24233 1.71647 1.32138 0.93762 1.13473 1.42578 1.15836 1.67367 1.12409 1.20220 0.93142 1.29868 1.00297 0.91048 1.26868 1.08198 1.01945 0.92713 1.70989 1.08544 1.50037 1.33319 0.82727 0.71684 0.75871 0.75225 1.22706 1.20781 1.20487 0.93504 0.93365 0.92620 0.90162 0.93435 0.92022 0.88989 0.75039 0.74843 0.81050 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.18 71.98 0.66 -4.27 16 2 C -0.13 -4.16 5.61 30.59 0.17 -3.99 16 3 C 0.17 6.16 2.59 44.99 0.12 6.27 16 4 H 0.05 2.04 8.08 -2.38 -0.02 2.03 16 5 C 0.12 3.93 5.23 86.38 0.45 4.38 16 6 N -0.70 -24.59 5.38 -466.35 -2.51 -27.10 16 7 C 0.60 20.34 7.81 86.67 0.68 21.02 16 8 O -0.56 -20.15 16.80 -4.05 -0.07 -20.22 16 9 C -0.05 -1.45 6.87 41.36 0.28 -1.16 16 10 C -0.23 -4.54 11.21 67.76 0.76 -3.78 16 11 S 0.57 9.00 23.38 -56.49 -1.32 7.68 16 12 N -0.34 -9.48 12.49 37.02 0.46 -9.02 16 13 N -0.24 -8.00 11.24 -50.34 -0.57 -8.57 16 14 N -0.74 -34.73 4.50 -322.94 -1.45 -36.19 16 15 C -0.30 -16.03 7.75 84.03 0.65 -15.38 16 16 H 0.07 3.67 7.32 -2.91 -0.02 3.65 16 17 C -0.11 -6.04 5.50 84.86 0.47 -5.57 16 18 N -0.98 -61.14 13.70 21.65 0.30 -60.85 16 19 Si 1.12 52.18 29.92 68.60 2.05 54.23 16 20 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 H 0.05 1.99 5.99 -2.38 -0.01 1.97 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.41 16.07 7.72 -92.71 -0.72 15.35 16 31 H 0.24 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.36 18.27 6.63 -92.71 -0.61 17.65 16 33 H 0.24 15.12 6.77 -92.71 -0.63 14.49 16 Total: -1.00 -70.71 299.91 1.10 -69.61 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.03 Total: 32.87 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.24 Total: -2.47 kcal Atomic # 7 Polarization: -137.94 SS G_CDS: -3.77 Total: -141.72 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.07 Total: -20.22 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.05 Total: 54.23 kcal Atomic # 16 Polarization: 9.00 SS G_CDS: -1.32 Total: 7.68 kcal Total: -70.71 1.10 -69.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732209948.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.698 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds