Wall clock time and date at job start Mon Mar 30 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 120.00229 * 2 1 4 4 H 1.07998 * 120.00198 * 204.43845 * 3 2 1 5 5 C 1.38814 * 119.99391 * 24.44474 * 3 2 1 6 6 N 1.31614 * 120.00485 * 13.49673 * 5 3 2 7 7 Si 1.86803 * 119.99547 * 193.49442 * 5 3 2 8 8 H 1.48501 * 109.47013 * 90.00150 * 7 5 3 9 9 H 1.48507 * 109.47007 * 210.00182 * 7 5 3 10 10 H 1.48497 * 109.46926 * 329.99654 * 7 5 3 11 11 C 1.46502 * 120.00183 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47143 * 89.99638 * 11 2 1 13 13 N 1.46503 * 109.47161 * 180.02562 * 12 11 2 14 14 C 1.46498 * 119.99870 * 89.99996 * 13 12 11 15 15 C 1.34775 * 119.99939 * 270.00142 * 13 12 11 16 16 O 1.21611 * 119.99778 * 5.35012 * 15 13 12 17 17 C 1.47446 * 120.00332 * 185.35497 * 15 13 12 18 18 C 1.37976 * 124.15924 * 186.51472 * 17 15 13 19 19 S 1.72096 * 104.03650 * 179.97438 * 18 17 15 20 20 N 1.56404 * 96.15444 * 359.97438 * 19 18 17 21 21 N 1.27423 * 109.87248 * 359.75416 * 20 19 18 22 22 H 1.09000 * 109.46900 * 275.04424 * 1 2 3 23 23 H 1.09004 * 109.47081 * 35.03785 * 1 2 3 24 24 H 1.08993 * 109.47644 * 155.04375 * 1 2 3 25 25 H 0.96998 * 120.00508 * 180.02562 * 6 5 3 26 26 H 1.09006 * 109.46773 * 330.00123 * 11 2 1 27 27 H 1.09002 * 109.47350 * 209.99989 * 11 2 1 28 28 H 1.08997 * 109.47078 * 60.00301 * 12 11 2 29 29 H 1.09002 * 109.47284 * 300.00391 * 12 11 2 30 30 H 1.09004 * 109.46636 * 95.21325 * 14 13 12 31 31 H 1.09000 * 109.46815 * 215.20276 * 14 13 12 32 32 H 1.08996 * 109.47205 * 335.20905 * 14 13 12 33 33 H 1.08004 * 127.98348 * 359.95668 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1571 1.2278 -0.3869 5 6 1.5489 2.3342 0.4975 6 7 0.4426 2.2445 1.2048 7 14 2.3107 4.0067 0.1631 8 1 1.7544 4.5609 -1.0973 9 1 2.0003 4.9258 1.2875 10 1 3.7830 3.8630 0.0334 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 7 3.1845 -2.9788 -1.4438 14 6 2.4514 -4.2472 -1.4445 15 6 4.5322 -2.9793 -1.4437 16 8 5.1406 -1.9310 -1.3449 17 6 5.2690 -4.2509 -1.5634 18 6 6.6387 -4.3667 -1.4440 19 16 6.9367 -6.0467 -1.6691 20 7 5.4417 -6.4554 -1.8798 21 7 4.6951 -5.4265 -1.7929 22 1 -0.3633 0.0904 1.0237 23 1 -0.3633 0.8415 -0.5900 24 1 -0.3634 -0.9316 -0.4336 25 1 0.0226 3.0469 1.5521 26 1 1.6084 -2.0286 0.5129 27 1 3.1500 -1.1386 0.5133 28 1 3.0415 -0.9499 -1.9567 29 1 1.5000 -1.8399 -1.9571 30 1 2.3506 -4.6080 -2.4681 31 1 2.9967 -4.9822 -0.8524 32 1 1.4619 -4.0952 -1.0136 33 1 7.3580 -3.5838 -1.2536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732586972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:02 Heat of formation + Delta-G solvation = 79.605975 kcal Electronic energy + Delta-G solvation = -18350.892448 eV Core-core repulsion = 15348.282786 eV Total energy + Delta-G solvation = -3002.609662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30194 -39.21020 -36.14725 -34.90283 -32.39596 -31.37471 -28.86328 -27.15564 -26.53096 -25.80180 -24.32869 -22.37945 -20.76922 -20.24311 -18.47730 -16.76083 -16.53761 -16.27317 -16.05442 -15.49614 -14.87746 -14.60376 -13.86249 -13.45984 -13.19382 -13.00888 -12.86428 -12.51873 -12.30448 -12.23980 -11.80746 -11.30957 -10.84492 -10.81019 -10.49801 -10.37549 -10.27936 -10.22828 -10.10866 -10.02172 -9.81378 -9.75803 -8.68513 -8.36291 -6.67406 -5.67235 -3.15689 -0.16498 0.68907 1.30345 1.33016 3.07864 3.16267 3.43769 3.49616 3.52690 3.69137 4.48781 4.57194 4.65372 5.08147 5.35234 5.47202 5.64489 5.66706 5.77489 5.99759 6.15696 6.24623 6.55911 6.65378 6.76937 6.99556 7.26088 7.36997 7.50814 7.74753 7.89877 8.17996 8.46403 9.29259 9.91255 10.40098 11.37519 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036295 B = 0.004047 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.270301 B = 6917.472707 C = 7525.334455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.255 4.255 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.142 3.858 12 C 0.093 3.907 13 N -0.591 5.591 14 C 0.083 3.917 15 C 0.591 3.409 16 O -0.518 6.518 17 C -0.015 4.015 18 C -0.235 4.235 19 S 0.449 5.551 20 N -0.297 5.297 21 N -0.206 5.206 22 H 0.032 0.968 23 H 0.039 0.961 24 H -0.002 1.002 25 H 0.252 0.748 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 -18.010 -6.052 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.322 5.322 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.013 3.987 12 C -0.031 4.031 13 N -0.323 5.323 14 C -0.061 4.061 15 C 0.373 3.627 16 O -0.393 6.393 17 C -0.162 4.162 18 C -0.392 4.392 19 S 0.584 5.416 20 N -0.277 5.277 21 N -0.077 5.077 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.544 -19.171 -6.202 22.742 hybrid contribution 0.080 2.449 0.053 2.451 sum 10.624 -16.722 -6.149 20.744 Atomic orbital electron populations 1.20815 0.82614 0.95374 0.99595 1.43850 1.01779 1.00549 1.85980 1.19263 0.99231 0.85633 1.34333 0.91167 1.25044 0.98079 0.98622 0.97794 1.70065 1.20925 1.27388 1.36957 0.86249 0.78945 0.84076 0.77305 1.21484 1.21788 1.20333 1.20996 0.96634 0.88543 0.92508 1.22657 0.95475 0.82711 1.02243 1.47830 1.04764 1.08929 1.70741 1.22027 0.96947 0.84713 1.02381 1.16752 0.82286 0.85311 0.78355 1.90886 1.67784 1.30770 1.49811 1.22875 0.91872 0.94767 1.06654 1.28897 0.99591 1.05480 1.05244 1.81464 1.15664 0.95788 1.48639 1.78708 1.02467 1.23818 1.22724 1.71878 1.28052 0.94724 1.13025 0.94923 0.94189 0.98326 0.93810 0.94654 0.92997 0.89750 0.90897 0.92291 0.90090 0.90991 0.77459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.99 59.84 0.54 4.52 16 2 N -0.60 -15.52 2.92 -181.12 -0.53 -16.05 16 3 C -0.25 -7.28 9.64 -15.05 -0.15 -7.43 16 4 H 0.07 2.02 7.86 -52.49 -0.41 1.60 16 5 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 6 N -0.91 -27.07 10.83 55.49 0.60 -26.47 16 7 Si 0.90 22.53 29.57 -169.99 -5.03 17.51 16 8 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.14 3.07 5.97 -4.04 -0.02 3.05 16 12 C 0.09 1.73 5.67 -4.04 -0.02 1.71 16 13 N -0.59 -9.45 2.87 -182.84 -0.53 -9.97 16 14 C 0.08 1.05 9.23 59.85 0.55 1.60 16 15 C 0.59 9.82 7.65 -12.51 -0.10 9.72 16 16 O -0.52 -10.31 16.44 5.27 0.09 -10.22 16 17 C -0.01 -0.20 6.57 -83.78 -0.55 -0.75 16 18 C -0.23 -2.30 11.21 30.64 0.34 -1.96 16 19 S 0.45 3.30 23.38 -107.50 -2.51 0.79 16 20 N -0.30 -3.28 12.49 60.35 0.75 -2.53 16 21 N -0.21 -2.61 8.15 32.73 0.27 -2.34 16 22 H 0.03 0.88 7.31 -51.93 -0.38 0.50 16 23 H 0.04 1.05 7.44 -51.93 -0.39 0.67 16 24 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 26 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 27 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 28 H 0.08 1.77 7.50 -51.93 -0.39 1.38 16 29 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 1.01 5.86 -51.93 -0.30 0.70 16 32 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.21 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -33.37 298.68 -5.82 -39.19 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -3.94 Total: -4.86 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 0.51 Total: 10.45 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.57 Total: -57.36 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.51 Total: 0.79 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.37 -5.82 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732586972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.797 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds