Wall clock time and date at job start Mon Mar 30 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47227 * 2 1 4 4 C 1.53003 * 109.46656 * 240.00573 * 2 1 3 5 5 N 1.46503 * 109.47041 * 184.99727 * 4 2 1 6 6 C 1.46504 * 120.00262 * 270.00078 * 5 4 2 7 7 C 1.36940 * 119.99809 * 89.99889 * 5 4 2 8 8 H 1.08001 * 119.99902 * 22.34332 * 7 5 4 9 9 C 1.38805 * 120.00114 * 202.33976 * 7 5 4 10 10 N 1.31622 * 120.00288 * 11.35077 * 9 7 5 11 11 Si 1.86798 * 120.00230 * 191.35006 * 9 7 5 12 12 H 1.48502 * 109.47032 * 90.00034 * 11 9 7 13 13 H 1.48499 * 109.47384 * 209.99932 * 11 9 7 14 14 H 1.48503 * 109.47212 * 330.00188 * 11 9 7 15 15 N 1.46500 * 109.47577 * 120.00937 * 2 1 3 16 16 C 1.34775 * 119.99667 * 274.99883 * 15 2 1 17 17 O 1.21625 * 120.00130 * 359.97438 * 16 15 2 18 18 C 1.47167 * 120.00117 * 179.72027 * 16 15 2 19 19 C 1.38243 * 128.48085 * 179.97438 * 18 16 15 20 20 N 1.31245 * 111.89279 * 179.81579 * 19 18 16 21 21 N 1.27332 * 120.03225 * 0.53449 * 20 19 18 22 22 S 1.56631 * 109.74532 * 359.69164 * 21 20 19 23 23 H 1.08991 * 109.47157 * 59.99224 * 1 2 3 24 24 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46642 * 299.99320 * 1 2 3 26 26 H 1.08996 * 109.47560 * 304.99886 * 4 2 1 27 27 H 1.09004 * 109.47220 * 65.00478 * 4 2 1 28 28 H 1.09002 * 109.46948 * 94.22891 * 6 5 4 29 29 H 1.09001 * 109.47179 * 214.22708 * 6 5 4 30 30 H 1.08995 * 109.46870 * 334.22753 * 6 5 4 31 31 H 0.96999 * 120.00404 * 179.97438 * 10 9 7 32 32 H 0.96995 * 120.00310 * 94.99451 * 15 2 1 33 33 H 1.08004 * 124.05464 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3343 0.2342 -1.7615 7 6 4.0849 -1.9158 -0.6026 8 1 3.5338 -2.8399 -0.5091 9 6 5.3862 -1.8326 -0.1267 10 7 5.9795 -0.6614 -0.0343 11 14 6.2954 -3.3829 0.3826 12 1 7.0228 -3.9371 -0.7875 13 1 7.2649 -3.0571 1.4591 14 1 5.3213 -4.3870 0.8808 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0186 2.3570 17 8 1.8584 1.1616 2.4117 18 6 2.6320 -0.7139 3.5601 19 6 2.8294 -0.2017 4.8289 20 7 3.2699 -1.1150 5.6622 21 7 3.4724 -2.3044 5.2553 22 16 3.1133 -2.4118 3.7345 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 1.6053 -1.7197 -1.2954 27 1 1.7516 -0.1581 -2.1371 28 1 4.6023 0.9456 -0.9803 29 1 5.2403 -0.2026 -2.1815 30 1 3.7809 0.7486 -2.5471 31 1 6.8888 -0.6032 0.2986 32 1 2.2491 -1.6319 1.1524 33 1 2.6404 0.8259 5.1024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733032318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:40 Heat of formation + Delta-G solvation = 59.857687 kcal Electronic energy + Delta-G solvation = -19099.136989 eV Core-core repulsion = 16095.670977 eV Total energy + Delta-G solvation = -3003.466012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57638 -39.17248 -36.43617 -34.13655 -32.15191 -31.30661 -30.14526 -27.20159 -26.26160 -25.71743 -23.24150 -21.68675 -20.34464 -20.02405 -18.98430 -17.21632 -16.66524 -15.82601 -15.62782 -15.01956 -14.69332 -14.32572 -13.83797 -13.79018 -13.19244 -12.98051 -12.52408 -12.33223 -12.05286 -11.72730 -11.51298 -11.38114 -10.96331 -10.79375 -10.52238 -10.36678 -10.15008 -10.09044 -9.94774 -9.86934 -9.69209 -9.58285 -8.68783 -8.52879 -6.90249 -5.85802 -3.32390 -0.02321 1.06185 1.70805 2.18759 3.24667 3.31987 3.34740 3.36190 3.57255 4.23105 4.35166 4.93609 5.10192 5.22541 5.39347 5.54740 5.73705 5.76540 5.86997 6.05801 6.12413 6.33875 6.39989 6.66112 6.76589 6.99732 7.30540 7.59870 7.71132 7.78348 7.97340 8.24747 8.56228 9.08641 9.72477 10.22374 11.17744 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.010094 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.626356 B = 2773.152237 C = 4121.740952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 H 0.082 0.918 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.261 4.261 8 H 0.068 0.932 9 C 0.010 3.990 10 N -0.896 5.896 11 Si 0.885 3.115 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.273 1.273 15 N -0.675 5.675 16 C 0.600 3.400 17 O -0.538 6.538 18 C -0.264 4.264 19 C 0.058 3.942 20 N -0.257 5.257 21 N -0.275 5.275 22 S 0.434 5.566 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.045 0.955 30 H -0.003 1.003 31 H 0.254 0.746 32 H 0.404 0.596 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 -1.763 2.288 9.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 H 0.100 0.900 4 C 0.012 3.988 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.391 4.391 8 H 0.086 0.914 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.714 3.286 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.198 1.198 15 N -0.324 5.324 16 C 0.383 3.617 17 O -0.417 6.417 18 C -0.406 4.406 19 C -0.109 4.109 20 N -0.122 5.122 21 N -0.256 5.256 22 S 0.568 5.432 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.240 0.760 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.321 -2.642 2.998 9.231 hybrid contribution 0.565 0.291 0.127 0.648 sum -7.756 -2.352 3.125 8.686 Atomic orbital electron populations 1.22166 0.96401 1.01526 1.01886 1.21981 0.92093 0.98591 0.86341 0.90004 1.21224 0.85984 0.98067 0.93510 1.43907 0.98893 1.22644 1.66619 1.20816 0.93022 0.90434 0.93910 1.19112 0.97278 0.89535 1.33148 0.91395 1.24990 0.98591 0.96081 0.99329 1.70060 1.13438 1.21575 1.48925 0.86557 0.80438 0.83194 0.78410 1.21140 1.21577 1.19799 1.45653 1.64164 1.14241 1.08322 1.16404 0.78011 0.85850 0.81447 1.90774 1.51607 1.14592 1.84703 1.28190 1.12074 0.99714 1.00581 1.24354 0.97548 1.01765 0.87208 1.70647 1.14933 0.95080 1.31495 1.78740 1.21469 1.15827 1.09550 1.82833 1.42808 1.07674 1.09870 0.91866 0.92815 0.92781 0.93113 0.92546 0.95324 0.93641 0.98443 0.93584 0.76017 0.77152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.48 37.16 0.35 -1.82 16 2 C 0.12 2.01 2.88 -67.93 -0.20 1.81 16 3 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 4 C 0.14 2.48 5.36 -4.04 -0.02 2.46 16 5 N -0.60 -13.34 2.82 -181.11 -0.51 -13.85 16 6 C 0.16 3.77 9.01 59.85 0.54 4.31 16 7 C -0.26 -6.22 8.02 -15.06 -0.12 -6.34 16 8 H 0.07 1.54 7.84 -52.49 -0.41 1.13 16 9 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 10 N -0.90 -24.45 10.58 55.49 0.59 -23.86 16 11 Si 0.88 20.07 29.57 -169.99 -5.03 15.04 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 N -0.67 -12.10 4.48 -54.96 -0.25 -12.34 16 16 C 0.60 11.29 7.77 -12.64 -0.10 11.20 16 17 O -0.54 -11.32 16.64 5.26 0.09 -11.23 16 18 C -0.26 -4.47 6.81 -35.96 -0.25 -4.72 16 19 C 0.06 0.92 11.55 -17.80 -0.21 0.71 16 20 N -0.26 -4.31 11.54 30.36 0.35 -3.96 16 21 N -0.27 -4.62 12.51 60.35 0.75 -3.87 16 22 S 0.43 6.76 23.05 -107.50 -2.48 4.29 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.83 8.03 -51.93 -0.42 0.42 16 27 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 28 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 29 H 0.04 1.14 7.19 -51.93 -0.37 0.77 16 30 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 31 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 32 H 0.40 7.06 6.83 -40.82 -0.28 6.78 16 33 H 0.21 2.77 8.06 -52.48 -0.42 2.35 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -29.05 299.92 -5.95 -35.00 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.90 Total: 2.51 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.08 Total: 7.76 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.94 Total: -57.88 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -2.48 Total: 4.29 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.05 -5.95 -35.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733032318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.854 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds