Wall clock time and date at job start Mon Mar 30 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47227 * 2 1 4 4 C 1.53003 * 109.46656 * 240.00573 * 2 1 3 5 5 N 1.46503 * 109.47041 * 184.99727 * 4 2 1 6 6 C 1.46504 * 120.00262 * 270.00078 * 5 4 2 7 7 C 1.36940 * 119.99809 * 89.99889 * 5 4 2 8 8 H 1.08001 * 119.99902 * 22.34332 * 7 5 4 9 9 C 1.38805 * 120.00114 * 202.33976 * 7 5 4 10 10 N 1.31622 * 120.00288 * 11.35077 * 9 7 5 11 11 Si 1.86798 * 120.00230 * 191.35006 * 9 7 5 12 12 H 1.48502 * 109.47032 * 90.00034 * 11 9 7 13 13 H 1.48499 * 109.47384 * 209.99932 * 11 9 7 14 14 H 1.48503 * 109.47212 * 330.00188 * 11 9 7 15 15 N 1.46500 * 109.47577 * 120.00937 * 2 1 3 16 16 C 1.34775 * 119.99667 * 274.99883 * 15 2 1 17 17 O 1.21625 * 120.00130 * 359.97438 * 16 15 2 18 18 C 1.47167 * 120.00117 * 179.72027 * 16 15 2 19 19 C 1.38243 * 128.48085 * 179.97438 * 18 16 15 20 20 N 1.31245 * 111.89279 * 179.81579 * 19 18 16 21 21 N 1.27332 * 120.03225 * 0.53449 * 20 19 18 22 22 S 1.56631 * 109.74532 * 359.69164 * 21 20 19 23 23 H 1.08991 * 109.47157 * 59.99224 * 1 2 3 24 24 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46642 * 299.99320 * 1 2 3 26 26 H 1.08996 * 109.47560 * 304.99886 * 4 2 1 27 27 H 1.09004 * 109.47220 * 65.00478 * 4 2 1 28 28 H 1.09002 * 109.46948 * 94.22891 * 6 5 4 29 29 H 1.09001 * 109.47179 * 214.22708 * 6 5 4 30 30 H 1.08995 * 109.46870 * 334.22753 * 6 5 4 31 31 H 0.96999 * 120.00404 * 179.97438 * 10 9 7 32 32 H 0.96995 * 120.00310 * 94.99451 * 15 2 1 33 33 H 1.08004 * 124.05464 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3343 0.2342 -1.7615 7 6 4.0849 -1.9158 -0.6026 8 1 3.5338 -2.8399 -0.5091 9 6 5.3862 -1.8326 -0.1267 10 7 5.9795 -0.6614 -0.0343 11 14 6.2954 -3.3829 0.3826 12 1 7.0228 -3.9371 -0.7875 13 1 7.2649 -3.0571 1.4591 14 1 5.3213 -4.3870 0.8808 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0186 2.3570 17 8 1.8584 1.1616 2.4117 18 6 2.6320 -0.7139 3.5601 19 6 2.8294 -0.2017 4.8289 20 7 3.2699 -1.1150 5.6622 21 7 3.4724 -2.3044 5.2553 22 16 3.1133 -2.4118 3.7345 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 1.6053 -1.7197 -1.2954 27 1 1.7516 -0.1581 -2.1371 28 1 4.6023 0.9456 -0.9803 29 1 5.2403 -0.2026 -2.1815 30 1 3.7809 0.7486 -2.5471 31 1 6.8888 -0.6032 0.2986 32 1 2.2491 -1.6319 1.1524 33 1 2.6404 0.8259 5.1024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733032318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:40 Heat of formation + Delta-G solvation = 40.147422 kcal Electronic energy + Delta-G solvation = -19099.991690 eV Core-core repulsion = 16095.670977 eV Total energy + Delta-G solvation = -3004.320713 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88401 -40.62588 -38.03443 -35.76571 -33.58511 -32.93229 -31.59469 -28.52013 -28.00199 -27.34029 -24.61479 -23.32784 -21.76165 -21.46424 -20.28939 -18.80359 -18.28627 -17.26552 -16.96214 -16.78869 -16.03686 -15.75674 -15.48899 -15.25347 -14.87204 -14.49208 -13.90566 -13.80479 -13.38781 -13.09870 -13.01057 -12.82865 -12.72303 -12.49579 -12.12097 -11.95546 -11.92872 -11.66441 -11.42446 -11.16440 -11.14025 -10.89734 -10.59471 -9.96229 -8.75112 -7.76960 -5.23821 -1.33620 -0.22418 0.41730 0.89017 1.45178 1.50314 1.55673 1.91819 2.19061 2.52394 2.96632 3.38984 3.65034 3.69155 3.82779 4.19547 4.46327 4.55220 4.57065 4.81309 4.88263 4.94501 5.05288 5.21467 5.38617 5.43953 5.61004 5.69561 5.78905 6.35841 6.45720 6.57818 7.12462 7.19340 7.91965 8.37901 9.26110 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.010094 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.626356 B = 2773.152237 C = 4121.740952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.119 3.881 3 H 0.050 0.950 4 C 0.139 3.861 5 N -0.612 5.612 6 C 0.177 3.823 7 C -0.244 4.244 8 H 0.086 0.914 9 C -0.041 4.041 10 N -0.934 5.934 11 Si 0.926 3.074 12 H -0.293 1.293 13 H -0.308 1.308 14 H -0.243 1.243 15 N -0.674 5.674 16 C 0.598 3.402 17 O -0.567 6.567 18 C -0.288 4.288 19 C 0.068 3.932 20 N -0.270 5.270 21 N -0.288 5.288 22 S 0.477 5.523 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.079 0.921 28 H -0.007 1.007 29 H 0.017 0.983 30 H 0.029 0.971 31 H 0.241 0.759 32 H 0.406 0.594 33 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 -3.119 1.919 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 H 0.068 0.932 4 C 0.012 3.988 5 N -0.334 5.334 6 C 0.032 3.968 7 C -0.375 4.375 8 H 0.104 0.896 9 C -0.236 4.236 10 N -0.581 5.581 11 Si 0.755 3.245 12 H -0.220 1.220 13 H -0.236 1.236 14 H -0.166 1.166 15 N -0.323 5.323 16 C 0.382 3.618 17 O -0.448 6.448 18 C -0.430 4.430 19 C -0.099 4.099 20 N -0.133 5.133 21 N -0.269 5.269 22 S 0.611 5.389 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.012 0.988 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.243 0.757 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.231 -4.045 2.615 11.308 hybrid contribution 1.074 0.702 0.192 1.298 sum -9.157 -3.343 2.808 10.144 Atomic orbital electron populations 1.22054 0.93152 1.03034 1.02499 1.21915 0.94518 0.96588 0.85747 0.93173 1.21450 0.83075 0.99767 0.94463 1.44137 1.00937 1.21982 1.66369 1.20510 0.92779 0.90019 0.93487 1.19503 0.96922 0.90482 1.30556 0.89603 1.25541 0.99772 0.97615 1.00710 1.70241 1.12994 1.23366 1.51497 0.85861 0.79705 0.81699 0.77237 1.22025 1.23610 1.16600 1.45720 1.63884 1.14299 1.08412 1.16596 0.77585 0.85588 0.82067 1.90751 1.53004 1.15805 1.85285 1.28106 1.13583 1.00853 1.00418 1.24714 0.96091 1.02462 0.86639 1.70697 1.15599 0.95153 1.31855 1.78635 1.21666 1.16150 1.10488 1.82595 1.41283 1.06295 1.08689 0.89634 0.90795 0.93837 0.90894 0.90301 0.98836 0.96410 0.95299 0.94972 0.75733 0.75127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.48 71.98 0.68 -2.88 16 2 C 0.12 3.84 2.88 44.99 0.13 3.97 16 3 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 4 C 0.14 4.47 5.36 86.38 0.46 4.94 16 5 N -0.61 -26.30 2.82 -726.92 -2.05 -28.35 16 6 C 0.18 8.19 9.01 127.77 1.15 9.34 16 7 C -0.24 -11.22 8.02 84.03 0.67 -10.55 16 8 H 0.09 3.60 7.84 -2.91 -0.02 3.58 16 9 C -0.04 -2.05 5.13 84.86 0.44 -1.62 16 10 N -0.93 -52.15 10.58 21.65 0.23 -51.92 16 11 Si 0.93 40.54 29.57 68.60 2.03 42.57 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 14 H -0.24 -9.31 7.11 99.48 0.71 -8.60 16 15 N -0.67 -23.17 4.48 -446.05 -2.00 -25.17 16 16 C 0.60 22.11 7.77 86.59 0.67 22.78 16 17 O -0.57 -23.85 16.64 -4.11 -0.07 -23.92 16 18 C -0.29 -9.45 6.81 24.62 0.17 -9.29 16 19 C 0.07 2.07 11.55 84.78 0.98 3.05 16 20 N -0.27 -8.69 11.54 -57.86 -0.67 -9.35 16 21 N -0.29 -9.26 12.51 37.02 0.46 -8.80 16 22 S 0.48 14.03 23.05 -56.49 -1.30 12.73 16 23 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 27 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 28 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 29 H 0.02 0.88 7.19 -2.39 -0.02 0.87 16 30 H 0.03 1.12 7.84 -2.39 -0.02 1.10 16 31 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 32 H 0.41 13.31 6.83 -92.71 -0.63 12.67 16 33 H 0.23 5.80 8.06 -2.91 -0.02 5.78 16 Total: -1.00 -62.77 299.92 2.49 -60.28 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.50 Total: 12.18 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 5.36 Total: 19.75 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -4.02 Total: -123.59 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 14.03 SS G_CDS: -1.30 Total: 12.73 kcal Total: -62.77 2.49 -60.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733032318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.429 kcal (2) G-P(sol) polarization free energy of solvation -62.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds