Wall clock time and date at job start Mon Mar 30 2020 01:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 119.99908 * 2 1 4 4 H 1.08000 * 120.00033 * 322.04153 * 3 2 1 5 5 C 1.38815 * 119.99698 * 142.04197 * 3 2 1 6 6 N 1.31612 * 119.99455 * 157.02173 * 5 3 2 7 7 Si 1.86795 * 120.00217 * 337.01982 * 5 3 2 8 8 H 1.48502 * 109.46868 * 95.68222 * 7 5 3 9 9 H 1.48496 * 109.47112 * 215.68222 * 7 5 3 10 10 H 1.48499 * 109.47166 * 335.68402 * 7 5 3 11 11 C 1.46505 * 120.00165 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47123 * 89.99367 * 11 2 1 13 13 C 1.52998 * 109.47122 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47547 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00519 * 179.72462 * 14 13 12 16 16 O 1.21613 * 119.99686 * 359.97438 * 15 14 13 17 17 C 1.47440 * 120.00514 * 179.97438 * 15 14 13 18 18 C 1.37982 * 124.15827 * 179.97438 * 17 15 14 19 19 S 1.72106 * 104.03350 * 179.97438 * 18 17 15 20 20 N 1.56397 * 96.15546 * 359.97438 * 19 18 17 21 21 N 1.27425 * 109.87761 * 359.74728 * 20 19 18 22 22 H 1.09008 * 109.46913 * 265.64586 * 1 2 3 23 23 H 1.08998 * 109.47539 * 25.64171 * 1 2 3 24 24 H 1.09002 * 109.47363 * 145.65250 * 1 2 3 25 25 H 0.97006 * 120.00020 * 180.02562 * 6 5 3 26 26 H 1.08996 * 109.46711 * 329.99638 * 11 2 1 27 27 H 1.09001 * 109.46937 * 209.99627 * 11 2 1 28 28 H 1.09001 * 109.47075 * 60.00061 * 12 11 2 29 29 H 1.09001 * 109.47427 * 299.99960 * 12 11 2 30 30 H 1.09001 * 109.47306 * 59.99945 * 13 12 11 31 31 H 1.09001 * 109.46728 * 300.00131 * 13 12 11 32 32 H 0.97002 * 119.99527 * 359.97438 * 14 13 12 33 33 H 1.07996 * 127.98568 * 359.96082 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7810 2.0224 -0.5753 5 6 3.3176 1.3131 0.7395 6 7 4.2043 2.2304 0.4164 7 14 3.6305 0.1823 2.1929 8 1 4.4681 -0.9638 1.7570 9 1 4.3370 0.9336 3.2614 10 1 2.3353 -0.3218 2.7158 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2169 -3.0351 -1.4438 14 7 3.4615 -3.4573 -2.8252 15 6 4.1285 -4.6020 -3.0720 16 8 4.5278 -5.2844 -2.1479 17 6 4.3742 -5.0272 -4.4622 18 6 5.0464 -6.1802 -4.8124 19 16 5.0334 -6.1644 -6.5334 20 7 4.2478 -4.8204 -6.6828 21 7 3.9698 -4.3507 -5.5314 22 1 -0.3633 -0.0780 1.0248 23 1 -0.3634 0.9264 -0.4447 24 1 -0.3634 -0.8485 -0.5798 25 1 5.0207 2.3190 0.9328 26 1 1.6085 -2.0285 0.5130 27 1 3.1500 -1.1386 0.5133 28 1 3.0414 -0.9500 -1.9568 29 1 1.5000 -1.8400 -1.9571 30 1 2.6275 -3.7948 -0.9304 31 1 4.1693 -2.9054 -0.9299 32 1 3.1465 -2.9109 -3.5622 33 1 5.4807 -6.9213 -4.1579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752035381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:29 Heat of formation + Delta-G solvation = 58.889667 kcal Electronic energy + Delta-G solvation = -17839.491264 eV Core-core repulsion = 14835.983276 eV Total energy + Delta-G solvation = -3003.507988 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32729 -39.30250 -36.53621 -34.87695 -32.53821 -31.79193 -30.78108 -27.54713 -26.42117 -25.58356 -23.50964 -21.67909 -21.09771 -20.70154 -19.27699 -17.05280 -16.74823 -16.35119 -16.00639 -15.59094 -15.45694 -14.97573 -14.26891 -13.89116 -13.51167 -13.23230 -12.92544 -12.74974 -12.42102 -12.16597 -11.72060 -11.39701 -11.21736 -10.93359 -10.70106 -10.55383 -10.43149 -10.39959 -10.25756 -10.25025 -9.78824 -9.53918 -9.05490 -8.51722 -6.82991 -6.01147 -3.42459 -0.26945 0.58100 1.18919 1.20407 2.98980 3.03614 3.31422 3.47328 3.53056 3.58531 4.38471 4.52029 4.65812 4.93893 5.03366 5.34427 5.45312 5.60142 5.81386 6.02119 6.08378 6.27713 6.32103 6.41031 6.60009 6.71229 6.75231 6.92179 7.11320 7.47603 8.00816 8.04915 8.37013 8.97670 9.70030 10.11256 11.14418 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.003662 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.998556 B = 7643.929880 C = 7789.892224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.273 4.273 4 H 0.078 0.922 5 C 0.037 3.963 6 N -0.898 5.898 7 Si 0.876 3.124 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.269 1.269 11 C 0.143 3.857 12 C -0.148 4.148 13 C 0.116 3.884 14 N -0.701 5.701 15 C 0.599 3.401 16 O -0.529 6.529 17 C -0.019 4.019 18 C -0.236 4.236 19 S 0.455 5.545 20 N -0.288 5.288 21 N -0.209 5.209 22 H 0.007 0.993 23 H 0.045 0.955 24 H 0.027 0.973 25 H 0.263 0.737 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -19.006 -12.459 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.402 4.402 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.539 5.539 7 Si 0.706 3.294 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.188 4.188 13 C -0.007 4.007 14 N -0.351 5.351 15 C 0.379 3.621 16 O -0.405 6.405 17 C -0.166 4.166 18 C -0.394 4.394 19 S 0.591 5.409 20 N -0.269 5.269 21 N -0.079 5.079 22 H 0.025 0.975 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.247 0.753 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.051 -18.913 -13.563 23.297 hybrid contribution 0.293 -0.391 2.045 2.103 sum 1.344 -19.303 -11.517 22.518 Atomic orbital electron populations 1.21085 0.84525 0.99062 0.97417 1.44037 1.00823 1.01961 1.86760 1.18801 1.06146 0.90851 1.24362 0.90411 1.25476 0.96789 0.96445 0.97671 1.69883 1.08422 1.36195 1.39397 0.86944 0.78037 0.80082 0.84365 1.21156 1.22821 1.19421 1.21034 0.96596 0.87888 0.92849 1.22423 0.99762 0.94421 1.02204 1.21619 1.01049 0.97241 0.80783 1.45997 1.55686 1.22760 1.10701 1.16676 0.78954 0.81832 0.84636 1.90843 1.51756 1.54498 1.43444 1.22782 1.03201 0.94556 0.96062 1.28889 1.04367 1.02626 1.03484 1.81519 1.40290 1.20599 0.98473 1.78682 1.18414 1.10471 1.19302 1.71552 1.17336 1.26107 0.92933 0.97528 0.93629 0.95456 0.92677 0.94056 0.92683 0.90304 0.91989 0.91311 0.91023 0.75283 0.77420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.47 10.70 59.85 0.64 3.12 16 2 N -0.61 -14.54 2.47 -181.11 -0.45 -14.99 16 3 C -0.27 -7.63 9.88 -15.06 -0.15 -7.78 16 4 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 5 C 0.04 1.07 5.29 -17.43 -0.09 0.97 16 6 N -0.90 -27.33 13.97 55.49 0.78 -26.55 16 7 Si 0.88 22.23 25.10 -169.99 -4.27 17.96 16 8 H -0.28 -6.95 6.68 56.52 0.38 -6.57 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.14 3.01 4.53 -4.04 -0.02 2.99 16 12 C -0.15 -2.62 5.65 -26.73 -0.15 -2.77 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 14 N -0.70 -10.09 5.55 -61.38 -0.34 -10.43 16 15 C 0.60 8.75 7.81 -12.52 -0.10 8.65 16 16 O -0.53 -9.00 16.80 5.27 0.09 -8.91 16 17 C -0.02 -0.23 6.87 -83.78 -0.58 -0.80 16 18 C -0.24 -2.04 11.21 30.64 0.34 -1.69 16 19 S 0.46 3.08 23.38 -107.50 -2.51 0.57 16 20 N -0.29 -3.19 12.49 60.35 0.75 -2.44 16 21 N -0.21 -2.64 11.24 32.74 0.37 -2.27 16 22 H 0.01 0.13 8.14 -51.92 -0.42 -0.29 16 23 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 24 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.06 1.28 3.38 -51.93 -0.18 1.11 16 28 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.41 5.44 8.06 -40.82 -0.33 5.11 16 33 H 0.21 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -33.20 300.26 -5.06 -38.26 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.88 Total: -0.22 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.12 Total: 4.50 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 1.11 Total: -56.68 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.27 Total: 17.96 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.51 Total: 0.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.20 -5.06 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752035381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.147 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds