Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00433 * 0.02562 * 7 6 5 9 9 C 1.47454 * 119.99700 * 179.97438 * 7 6 5 10 10 C 1.37985 * 124.15581 * 179.97438 * 9 7 6 11 11 S 1.72107 * 104.03256 * 180.02562 * 10 9 7 12 12 N 1.56396 * 96.15258 * 0.02562 * 11 10 9 13 13 N 1.27419 * 109.87977 * 359.72786 * 12 11 10 14 14 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 15 15 C 1.36933 * 120.00376 * 275.00368 * 14 2 1 16 16 H 1.07998 * 120.00056 * 0.02562 * 15 14 2 17 17 C 1.38820 * 120.00147 * 180.02562 * 15 14 2 18 18 N 1.31619 * 119.99690 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47553 * 59.99685 * 19 17 15 21 21 H 1.48501 * 109.46788 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47159 * 299.99543 * 19 17 15 23 23 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 27 27 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 30 30 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 31 31 H 1.08002 * 127.98046 * 359.97438 * 10 9 7 32 32 H 0.97003 * 119.99849 * 95.00425 * 14 2 1 33 33 H 0.97004 * 120.00058 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1606 -0.7982 -2.0217 9 6 5.8659 -2.0356 -3.9783 10 6 7.1965 -2.1243 -4.3326 11 16 7.1793 -3.0301 -5.7958 12 7 5.6281 -3.2194 -5.8576 13 7 5.0827 -2.6579 -4.8522 14 7 2.0183 -0.6905 1.1962 15 6 2.1490 -0.0074 2.3758 16 1 1.8917 1.0404 2.4244 17 6 2.6122 -0.6616 3.5091 18 7 2.9262 -1.9384 3.4497 19 14 2.7898 0.2701 5.1183 20 1 1.4671 0.8059 5.5288 21 1 3.3001 -0.6480 6.1681 22 1 3.7443 1.3933 4.9373 23 1 -0.3635 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 3.9995 -1.0726 -0.4258 29 1 3.8532 0.4372 -1.3572 30 1 3.4261 -1.7357 -3.1104 31 1 8.0514 -1.7182 -3.8122 32 1 2.2490 -1.6317 1.1527 33 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753009285.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = 39.485840 kcal Electronic energy + Delta-G solvation = -17747.420977 eV Core-core repulsion = 14743.071576 eV Total energy + Delta-G solvation = -3004.349402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27498 -39.20968 -36.60571 -34.45966 -32.49954 -32.14193 -29.42072 -28.22607 -27.19811 -24.48166 -23.54831 -22.09311 -21.00058 -20.05953 -19.08334 -17.22793 -16.94152 -16.27890 -15.94897 -15.44132 -15.23335 -14.64536 -14.01391 -13.89830 -13.47657 -12.98496 -12.88576 -12.48692 -12.37859 -12.02134 -11.53888 -11.10200 -10.91500 -10.75559 -10.67756 -10.60323 -10.34668 -10.33635 -10.20562 -10.17824 -9.88828 -9.61427 -8.94806 -8.85085 -6.93286 -5.72790 -3.01572 -0.22293 0.62553 1.23881 1.25386 3.08432 3.13243 3.47338 3.51809 3.52539 3.64246 4.44200 4.62893 4.73376 5.09585 5.29597 5.41043 5.58218 5.69546 5.88070 6.08422 6.18511 6.32927 6.39387 6.44106 6.61625 6.70665 6.88227 7.08349 7.15948 7.55542 7.73624 8.13041 8.45526 9.56819 10.13549 10.48214 11.49776 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.003572 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.407051 B = 7836.563131 C = 8472.979396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.120 3.880 6 N -0.705 5.705 7 C 0.597 3.403 8 O -0.521 6.521 9 C -0.017 4.017 10 C -0.235 4.235 11 S 0.454 5.546 12 N -0.291 5.291 13 N -0.211 5.211 14 N -0.724 5.724 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.286 1.286 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.407 0.593 31 H 0.209 0.791 32 H 0.383 0.617 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.028 -1.385 -20.267 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.002 4.002 6 N -0.356 5.356 7 C 0.377 3.623 8 O -0.396 6.396 9 C -0.165 4.165 10 C -0.392 4.392 11 S 0.589 5.411 12 N -0.272 5.272 13 N -0.082 5.082 14 N -0.366 5.366 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.213 1.213 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.242 0.758 31 H 0.226 0.774 32 H 0.217 0.783 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.091 -1.871 -21.092 22.330 hybrid contribution -0.033 0.731 2.019 2.147 sum 7.058 -1.140 -19.073 20.369 Atomic orbital electron populations 1.22423 0.99076 1.00888 0.99979 1.20147 0.91926 0.95558 0.85931 0.93227 1.22076 0.93551 1.02091 0.99511 1.21597 0.94808 0.97249 0.86546 1.45980 1.06462 1.55599 1.27514 1.16644 0.83238 0.79932 0.82504 1.90881 1.55535 1.45529 1.47654 1.22837 0.90174 1.03871 0.99587 1.28907 1.01905 1.04975 1.03435 1.81503 1.10885 1.34874 1.13790 1.78653 1.06524 1.22732 1.19244 1.71525 1.30755 1.07481 0.98390 1.42458 1.78118 1.10673 1.05361 1.19182 1.36600 0.93845 0.87376 0.91245 1.24722 1.02142 0.95948 0.98026 1.69647 1.50841 1.08681 1.28952 0.86292 0.77718 0.78651 0.83671 1.21365 1.21769 1.21257 0.92708 0.94534 0.93490 0.91703 0.91387 0.89235 0.91303 0.75837 0.77370 0.78270 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.34 2.89 -67.94 -0.20 3.14 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.06 4.87 -26.74 -0.13 -2.19 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.97 16 6 N -0.71 -10.16 5.55 -61.37 -0.34 -10.50 16 7 C 0.60 9.17 7.81 -12.51 -0.10 9.07 16 8 O -0.52 -9.71 16.80 5.27 0.09 -9.62 16 9 C -0.02 -0.22 6.87 -83.78 -0.58 -0.79 16 10 C -0.24 -2.16 11.21 30.64 0.34 -1.81 16 11 S 0.45 3.18 23.38 -107.50 -2.51 0.66 16 12 N -0.29 -3.19 12.49 60.35 0.75 -2.44 16 13 N -0.21 -2.63 11.24 32.74 0.37 -2.27 16 14 N -0.72 -17.71 4.57 -53.43 -0.24 -17.95 16 15 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 19 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.41 5.01 8.06 -40.82 -0.33 4.68 16 31 H 0.21 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -32.91 306.82 -6.11 -39.02 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.97 Total: 8.76 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.57 Total: -0.30 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 1.26 Total: -60.70 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.51 Total: 0.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.91 -6.11 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753009285.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.501 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds