Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00433 * 0.02562 * 7 6 5 9 9 C 1.47454 * 119.99700 * 179.97438 * 7 6 5 10 10 C 1.37985 * 124.15581 * 179.97438 * 9 7 6 11 11 S 1.72107 * 104.03256 * 180.02562 * 10 9 7 12 12 N 1.56396 * 96.15258 * 0.02562 * 11 10 9 13 13 N 1.27419 * 109.87977 * 359.72786 * 12 11 10 14 14 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 15 15 C 1.36933 * 120.00376 * 275.00368 * 14 2 1 16 16 H 1.07998 * 120.00056 * 0.02562 * 15 14 2 17 17 C 1.38820 * 120.00147 * 180.02562 * 15 14 2 18 18 N 1.31619 * 119.99690 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47553 * 59.99685 * 19 17 15 21 21 H 1.48501 * 109.46788 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47159 * 299.99543 * 19 17 15 23 23 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 27 27 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 30 30 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 31 31 H 1.08002 * 127.98046 * 359.97438 * 10 9 7 32 32 H 0.97003 * 119.99849 * 95.00425 * 14 2 1 33 33 H 0.97004 * 120.00058 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1606 -0.7982 -2.0217 9 6 5.8659 -2.0356 -3.9783 10 6 7.1965 -2.1243 -4.3326 11 16 7.1793 -3.0301 -5.7958 12 7 5.6281 -3.2194 -5.8576 13 7 5.0827 -2.6579 -4.8522 14 7 2.0183 -0.6905 1.1962 15 6 2.1490 -0.0074 2.3758 16 1 1.8917 1.0404 2.4244 17 6 2.6122 -0.6616 3.5091 18 7 2.9262 -1.9384 3.4497 19 14 2.7898 0.2701 5.1183 20 1 1.4671 0.8059 5.5288 21 1 3.3001 -0.6480 6.1681 22 1 3.7443 1.3933 4.9373 23 1 -0.3635 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 3.9995 -1.0726 -0.4258 29 1 3.8532 0.4372 -1.3572 30 1 3.4261 -1.7357 -3.1104 31 1 8.0514 -1.7182 -3.8122 32 1 2.2490 -1.6317 1.1527 33 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753009285.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = 14.042802 kcal Electronic energy + Delta-G solvation = -17748.524270 eV Core-core repulsion = 14743.071576 eV Total energy + Delta-G solvation = -3005.452695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15418 -40.39026 -38.15786 -35.94363 -34.17055 -33.23841 -31.09629 -29.73218 -28.06587 -25.98690 -25.21168 -23.34354 -22.00788 -21.44573 -20.24106 -19.21187 -17.87880 -17.25358 -17.10682 -16.80473 -16.34502 -16.19515 -15.56694 -15.33408 -15.13140 -14.49657 -14.13043 -13.69363 -13.58275 -13.24321 -13.07821 -12.77910 -12.62666 -12.33169 -12.26193 -12.13365 -11.75666 -11.59339 -11.42325 -11.25958 -11.18738 -10.91587 -10.90806 -10.20653 -8.96699 -7.90693 -5.17748 -0.95370 -0.06824 0.29430 0.52627 1.47591 1.50514 1.56026 1.96860 2.02916 2.58905 2.72114 3.43355 3.62159 3.82602 3.91474 3.98387 4.22293 4.34454 4.37241 4.67173 4.75645 4.87921 5.01455 5.09076 5.19174 5.32434 5.40188 5.55674 5.62255 6.20863 6.31901 6.53803 6.97942 7.37976 8.15630 8.37280 9.32712 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.003572 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.407051 B = 7836.563131 C = 8472.979396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.131 3.869 6 N -0.696 5.696 7 C 0.595 3.405 8 O -0.564 6.564 9 C -0.043 4.043 10 C -0.241 4.241 11 S 0.574 5.426 12 N -0.330 5.330 13 N -0.232 5.232 14 N -0.736 5.736 15 C -0.235 4.235 16 H 0.075 0.925 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.967 3.033 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.280 1.280 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.418 0.582 31 H 0.226 0.774 32 H 0.371 0.629 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -0.994 -22.433 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.157 4.157 5 C 0.008 3.992 6 N -0.347 5.347 7 C 0.377 3.623 8 O -0.442 6.442 9 C -0.191 4.191 10 C -0.397 4.397 11 S 0.709 5.291 12 N -0.311 5.311 13 N -0.101 5.101 14 N -0.377 5.377 15 C -0.367 4.367 16 H 0.093 0.907 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.797 3.203 20 H -0.204 1.204 21 H -0.225 1.225 22 H -0.207 1.207 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.256 0.744 31 H 0.242 0.758 32 H 0.203 0.797 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.259 -1.455 -23.318 24.465 hybrid contribution 0.007 0.598 2.493 2.564 sum 7.266 -0.858 -20.825 22.073 Atomic orbital electron populations 1.22268 0.97193 1.01006 1.00906 1.20436 0.93111 0.95291 0.85440 0.93539 1.21937 0.92428 1.02155 0.99152 1.21274 0.95539 0.96554 0.85849 1.45826 1.06768 1.55264 1.26840 1.17026 0.82950 0.79294 0.82987 1.90847 1.56447 1.47468 1.49399 1.22450 0.91549 1.05670 0.99419 1.29289 1.01295 1.04488 1.04665 1.81092 1.06870 1.30987 1.10166 1.78285 1.09790 1.23683 1.19355 1.71563 1.31558 1.08202 0.98796 1.42661 1.78409 1.10256 1.06327 1.19582 1.34502 0.94151 0.88447 0.90712 1.25490 1.03256 0.96841 1.01332 1.69808 1.52862 1.10215 1.29273 0.85295 0.77905 0.77324 0.79775 1.20377 1.22456 1.20682 0.94717 0.90628 0.93769 0.87752 0.91162 0.93643 0.91879 0.74419 0.75768 0.79664 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.49 71.98 0.68 -4.43 16 2 C 0.17 6.20 2.89 44.99 0.13 6.33 16 3 H 0.05 1.77 8.08 -2.39 -0.02 1.76 16 4 C -0.12 -3.50 4.87 30.59 0.15 -3.35 16 5 C 0.13 4.42 5.56 86.38 0.48 4.90 16 6 N -0.70 -20.11 5.55 -466.34 -2.59 -22.70 16 7 C 0.60 18.56 7.81 86.67 0.68 19.24 16 8 O -0.56 -21.68 16.80 -4.05 -0.07 -21.75 16 9 C -0.04 -1.05 6.87 41.36 0.28 -0.76 16 10 C -0.24 -3.97 11.21 67.76 0.76 -3.21 16 11 S 0.57 6.26 23.38 -56.49 -1.32 4.94 16 12 N -0.33 -6.58 12.49 37.02 0.46 -6.12 16 13 N -0.23 -5.54 11.24 -50.34 -0.57 -6.11 16 14 N -0.74 -36.57 4.57 -322.96 -1.48 -38.04 16 15 C -0.23 -13.08 9.93 84.04 0.83 -12.24 16 16 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 17 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 18 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 19 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.94 7.75 -2.39 -0.02 1.93 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.42 10.02 8.06 -92.71 -0.75 9.27 16 31 H 0.23 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.37 20.03 7.80 -92.71 -0.72 19.30 16 33 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.57 306.82 0.90 -72.68 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.32 Total: 25.73 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 4.46 Total: 2.43 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -3.89 Total: -133.19 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.07 Total: -21.75 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.32 Total: 4.94 kcal Total: -73.57 0.90 -72.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753009285.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.721 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds